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Cluster: HRGMv2_2448_CGC69

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2448_68 HRGMv2_2448_68_2 1024 3135 - 1.B.52.2.1
NULL(UNKNOWN) HRGMv2_2448_68 HRGMv2_2448_68_3 3449 4024 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2448_68 HRGMv2_2448_68_4 4036 4710 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2448_68 HRGMv2_2448_68_5 4741 5583 - 3.A.1.144.1
STP HRGMv2_2448_68 HRGMv2_2448_68_6 5700 6278 - TetR_N
TC HRGMv2_2448_68 HRGMv2_2448_68_7 6417 7211 - 3.A.1.34.1
TC HRGMv2_2448_68 HRGMv2_2448_68_8 7205 8128 - 3.A.1.34.1
TC HRGMv2_2448_68 HRGMv2_2448_68_9 8406 9404 - 3.A.1.34.1
TC HRGMv2_2448_68 HRGMv2_2448_68_10 10023 11588 - 2.A.21.2.5
NULL(UNKNOWN) HRGMv2_2448_68 HRGMv2_2448_68_11 11905 12255 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2448_68 HRGMv2_2448_68_12 12371 13561 - GT4
Gene ID: HRGMv2_2448_68_2
Type: TC
Location: 1024 - 3135 (-)
Gene ID: HRGMv2_2448_68_3
Type:
Location: 3449 - 4024 (-)
Gene ID: HRGMv2_2448_68_4
Type:
Location: 4036 - 4710 (-)
Gene ID: HRGMv2_2448_68_5
Type: TC
Location: 4741 - 5583 (-)
Gene ID: HRGMv2_2448_68_6
Type: STP
Location: 5700 - 6278 (-)
Gene ID: HRGMv2_2448_68_7
Type: TC
Location: 6417 - 7211 (-)
Gene ID: HRGMv2_2448_68_8
Type: TC
Location: 7205 - 8128 (-)
Gene ID: HRGMv2_2448_68_9
Type: TC
Location: 8406 - 9404 (-)
Gene ID: HRGMv2_2448_68_10
Type: TC
Location: 10023 - 11588 (-)
Gene ID: HRGMv2_2448_68_11
Type:
Location: 11905 - 12255 (-)
Gene ID: HRGMv2_2448_68_12
Type: CAZyme
Location: 12371 - 13561 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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