dbCAN Logo

Cluster: HRGMv2_2448_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2448_48 HRGMv2_2448_48_9 7281 9023 + 3.A.1.135.5
TC HRGMv2_2448_48 HRGMv2_2448_48_10 9016 10833 + 3.A.1.135.5
TC HRGMv2_2448_48 HRGMv2_2448_48_11 10877 12244 + 2.A.66.1.32
pfam HRGMv2_2448_48 HRGMv2_2448_48_12 12527 14062 + PLDc | PLDc | PLDc_2 | PLDc_2 | PLDc_N
TC HRGMv2_2448_48 HRGMv2_2448_48_13 14340 15002 + 9.B.143.2.3
NULL(UNKNOWN) HRGMv2_2448_48 HRGMv2_2448_48_14 15074 15343 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2448_48 HRGMv2_2448_48_15 15360 16529 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2448_48 HRGMv2_2448_48_16 16677 17936 - GH25
TC HRGMv2_2448_48 HRGMv2_2448_48_17 18303 19937 + 4.C.1.1.4
CAZyme HRGMv2_2448_48 HRGMv2_2448_48_18 20139 21185 + GT2
Gene ID: HRGMv2_2448_48_9
Type: TC
Location: 7281 - 9023 (+)
Gene ID: HRGMv2_2448_48_10
Type: TC
Location: 9016 - 10833 (+)
Gene ID: HRGMv2_2448_48_11
Type: TC
Location: 10877 - 12244 (+)
Gene ID: HRGMv2_2448_48_12
Type: pfam
Location: 12527 - 14062 (+)
Gene ID: HRGMv2_2448_48_13
Type: TC
Location: 14340 - 15002 (+)
Gene ID: HRGMv2_2448_48_14
Type:
Location: 15074 - 15343 (+)
Gene ID: HRGMv2_2448_48_15
Type:
Location: 15360 - 16529 (+)
Gene ID: HRGMv2_2448_48_16
Type: CAZyme
Location: 16677 - 17936 (-)
Gene ID: HRGMv2_2448_48_17
Type: TC
Location: 18303 - 19937 (+)
Gene ID: HRGMv2_2448_48_18
Type: CAZyme
Location: 20139 - 21185 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List