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Cluster: HRGMv2_2448_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2448_40 HRGMv2_2448_40_9 8485 10530 + GH13_14
CAZyme HRGMv2_2448_40 HRGMv2_2448_40_10 10656 11744 + CBM2 | CE3
CAZyme HRGMv2_2448_40 HRGMv2_2448_40_11 11999 13798 - GH13_9
STP HRGMv2_2448_40 HRGMv2_2448_40_12 13948 14472 + TetR_N
pfam HRGMv2_2448_40 HRGMv2_2448_40_13 14712 16133 + SBP_bac_1
TC HRGMv2_2448_40 HRGMv2_2448_40_14 16229 17125 + 3.A.1.1.42
TC HRGMv2_2448_40 HRGMv2_2448_40_15 17126 18025 + 3.A.1.1.47
pfam HRGMv2_2448_40 HRGMv2_2448_40_16 18118 18666 - Cupin_1 | Cupin_2
pfam HRGMv2_2448_40 HRGMv2_2448_40_17 18885 19910 + Aminotran_4
CAZyme HRGMv2_2448_40 HRGMv2_2448_40_18 20348 22816 + CBM13 | GH43_4
Gene ID: HRGMv2_2448_40_9
Type: CAZyme
Location: 8485 - 10530 (+)
Gene ID: HRGMv2_2448_40_10
Type: CAZyme
Location: 10656 - 11744 (+)
Gene ID: HRGMv2_2448_40_11
Type: CAZyme
Location: 11999 - 13798 (-)
Gene ID: HRGMv2_2448_40_12
Type: STP
Location: 13948 - 14472 (+)
Gene ID: HRGMv2_2448_40_13
Type: pfam
Location: 14712 - 16133 (+)
Gene ID: HRGMv2_2448_40_14
Type: TC
Location: 16229 - 17125 (+)
Gene ID: HRGMv2_2448_40_15
Type: TC
Location: 17126 - 18025 (+)
Gene ID: HRGMv2_2448_40_16
Type: pfam
Location: 18118 - 18666 (-)
Gene ID: HRGMv2_2448_40_17
Type: pfam
Location: 18885 - 19910 (+)
Gene ID: HRGMv2_2448_40_18
Type: CAZyme
Location: 20348 - 22816 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2448_40_17 vegan > omnivore 1.26731 0.03778
HRGMv2_2448_40_17 vegan > vegetarian 1.57048 0.03163

🧭 Explore Read Mapping of CGC

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