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Cluster: HRGMv2_2448_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2448_38 HRGMv2_2448_38_7 11112 12086 + 3.A.1.1.25
TC HRGMv2_2448_38 HRGMv2_2448_38_8 12086 12952 + 3.A.1.1.41
STP HRGMv2_2448_38 HRGMv2_2448_38_9 13093 14376 + SBP_bac_1
CAZyme HRGMv2_2448_38 HRGMv2_2448_38_10 14486 15289 + GH16_21
NULL(UNKNOWN) HRGMv2_2448_38 HRGMv2_2448_38_11 15303 15431 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2448_38 HRGMv2_2448_38_12 15497 16306 - HTH_AraC | HTH_AraC
TC HRGMv2_2448_38 HRGMv2_2448_38_13 16474 17439 + 3.A.1.14.13
pfam HRGMv2_2448_38 HRGMv2_2448_38_14 17429 18391 + FecCD
TC HRGMv2_2448_38 HRGMv2_2448_38_15 18388 19143 + 3.A.1.14.7
Gene ID: HRGMv2_2448_38_7
Type: TC
Location: 11112 - 12086 (+)
Gene ID: HRGMv2_2448_38_8
Type: TC
Location: 12086 - 12952 (+)
Gene ID: HRGMv2_2448_38_9
Type: STP
Location: 13093 - 14376 (+)
Gene ID: HRGMv2_2448_38_10
Type: CAZyme
Location: 14486 - 15289 (+)
Gene ID: HRGMv2_2448_38_11
Type:
Location: 15303 - 15431 (+)
Gene ID: HRGMv2_2448_38_12
Type: TF
Location: 15497 - 16306 (-)
Gene ID: HRGMv2_2448_38_13
Type: TC
Location: 16474 - 17439 (+)
Gene ID: HRGMv2_2448_38_14
Type: pfam
Location: 17429 - 18391 (+)
Gene ID: HRGMv2_2448_38_15
Type: TC
Location: 18388 - 19143 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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