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Cluster: HRGMv2_2448_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2448_25 HRGMv2_2448_25_25 27315 28574 + GH27
pfam HRGMv2_2448_25 HRGMv2_2448_25_26 28662 29048 - DUF1284
TC HRGMv2_2448_25 HRGMv2_2448_25_27 29035 29604 - 3.A.1.25.5
TC HRGMv2_2448_25 HRGMv2_2448_25_28 29767 31095 - 2.A.3.8.12
peptidase HRGMv2_2448_25 HRGMv2_2448_25_29 31297 32475 - M20.019
TC HRGMv2_2448_25 HRGMv2_2448_25_30 32493 33308 - 3.A.1.24.5
TC HRGMv2_2448_25 HRGMv2_2448_25_31 33403 34083 - 3.A.1.24.5
TC HRGMv2_2448_25 HRGMv2_2448_25_32 34052 35080 - 3.A.1.24.2
Gene ID: HRGMv2_2448_25_25
Type: CAZyme
Location: 27315 - 28574 (+)
Gene ID: HRGMv2_2448_25_26
Type: pfam
Location: 28662 - 29048 (-)
Gene ID: HRGMv2_2448_25_27
Type: TC
Location: 29035 - 29604 (-)
Gene ID: HRGMv2_2448_25_28
Type: TC
Location: 29767 - 31095 (-)
Gene ID: HRGMv2_2448_25_29
Type: peptidase
Location: 31297 - 32475 (-)
Gene ID: HRGMv2_2448_25_30
Type: TC
Location: 32493 - 33308 (-)
Gene ID: HRGMv2_2448_25_31
Type: TC
Location: 33403 - 34083 (-)
Gene ID: HRGMv2_2448_25_32
Type: TC
Location: 34052 - 35080 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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