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Cluster: HRGMv2_2448_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2448_21 HRGMv2_2448_21_18 15975 17405 + 9.A.11.1.1
NULL(UNKNOWN) HRGMv2_2448_21 HRGMv2_2448_21_19 17509 19230 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2448_21 HRGMv2_2448_21_20 19712 20257 + 2.A.51.1.6
TC HRGMv2_2448_21 HRGMv2_2448_21_21 20254 20817 + 2.A.51.1.6
TC HRGMv2_2448_21 HRGMv2_2448_21_22 21099 22478 + 9.A.5.1.1
pfam HRGMv2_2448_21 HRGMv2_2448_21_23 23298 25037 - PK | PEP-utilizers | PK_C
pfam HRGMv2_2448_21 HRGMv2_2448_21_24 25338 25799 - Rubrerythrin
TC HRGMv2_2448_21 HRGMv2_2448_21_25 25859 27064 - 2.A.23.1.5
pfam HRGMv2_2448_21 HRGMv2_2448_21_26 27280 27468 + Fer4_13 | Fer4_15
pfam HRGMv2_2448_21 HRGMv2_2448_21_27 27569 28378 - DUF2225
CAZyme HRGMv2_2448_21 HRGMv2_2448_21_28 28419 30467 - GH42
TF HRGMv2_2448_21 HRGMv2_2448_21_29 30454 32001 - HTH_AraC
TC HRGMv2_2448_21 HRGMv2_2448_21_30 31982 33787 - 8.A.59.2.1
CAZyme HRGMv2_2448_21 HRGMv2_2448_21_31 33851 35911 - GH3
CAZyme HRGMv2_2448_21 HRGMv2_2448_21_32 36002 38353 - GH31_3
TC HRGMv2_2448_21 HRGMv2_2448_21_33 38576 40312 - 3.A.1.1.29
TC HRGMv2_2448_21 HRGMv2_2448_21_34 40426 41316 - 3.A.1.1.29
TC HRGMv2_2448_21 HRGMv2_2448_21_35 41329 42288 - 3.A.1.1.29
CAZyme HRGMv2_2448_21 HRGMv2_2448_21_36 42426 44747 - GH95
Gene ID: HRGMv2_2448_21_18
Type: TC
Location: 15975 - 17405 (+)
Gene ID: HRGMv2_2448_21_19
Type:
Location: 17509 - 19230 (-)
Gene ID: HRGMv2_2448_21_20
Type: TC
Location: 19712 - 20257 (+)
Gene ID: HRGMv2_2448_21_21
Type: TC
Location: 20254 - 20817 (+)
Gene ID: HRGMv2_2448_21_22
Type: TC
Location: 21099 - 22478 (+)
Gene ID: HRGMv2_2448_21_23
Type: pfam
Location: 23298 - 25037 (-)
Gene ID: HRGMv2_2448_21_24
Type: pfam
Location: 25338 - 25799 (-)
Gene ID: HRGMv2_2448_21_25
Type: TC
Location: 25859 - 27064 (-)
Gene ID: HRGMv2_2448_21_26
Type: pfam
Location: 27280 - 27468 (+)
Gene ID: HRGMv2_2448_21_27
Type: pfam
Location: 27569 - 28378 (-)
Gene ID: HRGMv2_2448_21_28
Type: CAZyme
Location: 28419 - 30467 (-)
Gene ID: HRGMv2_2448_21_29
Type: TF
Location: 30454 - 32001 (-)
Gene ID: HRGMv2_2448_21_30
Type: TC
Location: 31982 - 33787 (-)
Gene ID: HRGMv2_2448_21_31
Type: CAZyme
Location: 33851 - 35911 (-)
Gene ID: HRGMv2_2448_21_32
Type: CAZyme
Location: 36002 - 38353 (-)
Gene ID: HRGMv2_2448_21_33
Type: TC
Location: 38576 - 40312 (-)
Gene ID: HRGMv2_2448_21_34
Type: TC
Location: 40426 - 41316 (-)
Gene ID: HRGMv2_2448_21_35
Type: TC
Location: 41329 - 42288 (-)
Gene ID: HRGMv2_2448_21_36
Type: CAZyme
Location: 42426 - 44747 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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