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Cluster: HRGMv2_2448_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2448_19 HRGMv2_2448_19_32 37153 38934 - 3.A.1.106.3
TC HRGMv2_2448_19 HRGMv2_2448_19_33 38934 40676 - 3.A.1.106.3
TF HRGMv2_2448_19 HRGMv2_2448_19_34 40829 41683 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2448_19 HRGMv2_2448_19_35 41723 44428 - CBM13 | CBM2 | PL11
STP HRGMv2_2448_19 HRGMv2_2448_19_36 44792 44965 - Fer4 | Fer4
TC HRGMv2_2448_19 HRGMv2_2448_19_37 45166 47403 - 3.A.7.7.1
CAZyme HRGMv2_2448_19 HRGMv2_2448_19_38 47675 48679 - GH26
STP HRGMv2_2448_19 HRGMv2_2448_19_39 48800 50245 - SBP_bac_1
TC HRGMv2_2448_19 HRGMv2_2448_19_40 50285 51283 - 3.A.1.1.20
TC HRGMv2_2448_19 HRGMv2_2448_19_41 51299 52213 - 3.A.1.1.34
Gene ID: HRGMv2_2448_19_32
Type: TC
Location: 37153 - 38934 (-)
Gene ID: HRGMv2_2448_19_33
Type: TC
Location: 38934 - 40676 (-)
Gene ID: HRGMv2_2448_19_34
Type: TF
Location: 40829 - 41683 (+)
Gene ID: HRGMv2_2448_19_35
Type: CAZyme
Location: 41723 - 44428 (-)
Gene ID: HRGMv2_2448_19_36
Type: STP
Location: 44792 - 44965 (-)
Gene ID: HRGMv2_2448_19_37
Type: TC
Location: 45166 - 47403 (-)
Gene ID: HRGMv2_2448_19_38
Type: CAZyme
Location: 47675 - 48679 (-)
Gene ID: HRGMv2_2448_19_39
Type: STP
Location: 48800 - 50245 (-)
Gene ID: HRGMv2_2448_19_40
Type: TC
Location: 50285 - 51283 (-)
Gene ID: HRGMv2_2448_19_41
Type: TC
Location: 51299 - 52213 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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