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Cluster: HRGMv2_2448_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2448_1 HRGMv2_2448_1_42 59699 60658 + GT2
pfam HRGMv2_2448_1 HRGMv2_2448_1_43 60903 61781 + NTP_transferase | NTP_transf_3
pfam HRGMv2_2448_1 HRGMv2_2448_1_44 61841 62899 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
TC HRGMv2_2448_1 HRGMv2_2448_1_45 63000 64343 + 3.A.1.104.1
TC HRGMv2_2448_1 HRGMv2_2448_1_46 64359 65579 + 3.A.1.103.1
pfam HRGMv2_2448_1 HRGMv2_2448_1_47 65576 66985 + Methyltransf_11 | Methyltransf_25
CAZyme HRGMv2_2448_1 HRGMv2_2448_1_48 66997 69447 + GT2 | GT2
CAZyme HRGMv2_2448_1 HRGMv2_2448_1_49 69544 70515 + GT2
Gene ID: HRGMv2_2448_1_42
Type: CAZyme
Location: 59699 - 60658 (+)
Gene ID: HRGMv2_2448_1_43
Type: pfam
Location: 60903 - 61781 (+)
Gene ID: HRGMv2_2448_1_44
Type: pfam
Location: 61841 - 62899 (+)
Gene ID: HRGMv2_2448_1_45
Type: TC
Location: 63000 - 64343 (+)
Gene ID: HRGMv2_2448_1_46
Type: TC
Location: 64359 - 65579 (+)
Gene ID: HRGMv2_2448_1_47
Type: pfam
Location: 65576 - 66985 (+)
Gene ID: HRGMv2_2448_1_48
Type: CAZyme
Location: 66997 - 69447 (+)
Gene ID: HRGMv2_2448_1_49
Type: CAZyme
Location: 69544 - 70515 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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