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Cluster: HRGMv2_2448_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2448_8 HRGMv2_2448_8_52 56373 57074 - 3.A.1.134.11
pfam HRGMv2_2448_8 HRGMv2_2448_8_53 57106 58170 - Epimerase | Sacchrp_dh_NADP
pfam HRGMv2_2448_8 HRGMv2_2448_8_54 58172 63637 - AMP-binding | PP-binding | Condensation | Thioesterase | Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31 | TubC_N
TC HRGMv2_2448_8 HRGMv2_2448_8_55 63655 66753 - 4.C.1.1.7
TC HRGMv2_2448_8 HRGMv2_2448_8_56 67079 69124 - 1.B.52.2.1
CAZyme HRGMv2_2448_8 HRGMv2_2448_8_57 69445 71574 + CBM77 | PL1
TF HRGMv2_2448_8 HRGMv2_2448_8_58 71654 72364 - Trans_reg_C
STP HRGMv2_2448_8 HRGMv2_2448_8_59 72361 75042 - HATPase_c | HisKA
TC HRGMv2_2448_8 HRGMv2_2448_8_60 75153 75755 - 3.A.3.7.1
TC HRGMv2_2448_8 HRGMv2_2448_8_61 75772 77814 - 3.A.3.7.1
TC HRGMv2_2448_8 HRGMv2_2448_8_62 77827 79563 - 3.A.3.7.1
NULL(UNKNOWN) HRGMv2_2448_8 HRGMv2_2448_8_63 80212 80328 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2448_8 HRGMv2_2448_8_64 80487 81743 - 2.A.49.9.2
pfam HRGMv2_2448_8 HRGMv2_2448_8_65 81842 82972 - AAA_21
pfam HRGMv2_2448_8 HRGMv2_2448_8_66 83120 83599 - HARE-HTH
TC HRGMv2_2448_8 HRGMv2_2448_8_67 84304 84639 - 3.A.1.134.4
Gene ID: HRGMv2_2448_8_52
Type: TC
Location: 56373 - 57074 (-)
Gene ID: HRGMv2_2448_8_53
Type: pfam
Location: 57106 - 58170 (-)
Gene ID: HRGMv2_2448_8_54
Type: pfam
Location: 58172 - 63637 (-)
Gene ID: HRGMv2_2448_8_55
Type: TC
Location: 63655 - 66753 (-)
Gene ID: HRGMv2_2448_8_56
Type: TC
Location: 67079 - 69124 (-)
Gene ID: HRGMv2_2448_8_57
Type: CAZyme
Location: 69445 - 71574 (+)
Gene ID: HRGMv2_2448_8_58
Type: TF
Location: 71654 - 72364 (-)
Gene ID: HRGMv2_2448_8_59
Type: STP
Location: 72361 - 75042 (-)
Gene ID: HRGMv2_2448_8_60
Type: TC
Location: 75153 - 75755 (-)
Gene ID: HRGMv2_2448_8_61
Type: TC
Location: 75772 - 77814 (-)
Gene ID: HRGMv2_2448_8_62
Type: TC
Location: 77827 - 79563 (-)
Gene ID: HRGMv2_2448_8_63
Type:
Location: 80212 - 80328 (-)
Gene ID: HRGMv2_2448_8_64
Type: TC
Location: 80487 - 81743 (-)
Gene ID: HRGMv2_2448_8_65
Type: pfam
Location: 81842 - 82972 (-)
Gene ID: HRGMv2_2448_8_66
Type: pfam
Location: 83120 - 83599 (-)
Gene ID: HRGMv2_2448_8_67
Type: TC
Location: 84304 - 84639 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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