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Cluster: HRGMv2_2447_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2447_23 HRGMv2_2447_23_11 9808 10710 - 3.A.1.147.1
CAZyme HRGMv2_2447_23 HRGMv2_2447_23_12 10973 17254 - CBM22 | CBM22 | CBM22 | CBM6 | CBM91 | GH43_10 | GH43_16
TF HRGMv2_2447_23 HRGMv2_2447_23_13 17492 17845 - HTH_5
TC HRGMv2_2447_23 HRGMv2_2447_23_14 18042 18662 - 2.A.115.2.14
TC HRGMv2_2447_23 HRGMv2_2447_23_15 18674 19384 - 3.A.1.4.10
TC HRGMv2_2447_23 HRGMv2_2447_23_16 19397 20158 - 3.A.1.4.10
TC HRGMv2_2447_23 HRGMv2_2447_23_17 20158 21222 - 3.A.1.4.8
TC HRGMv2_2447_23 HRGMv2_2447_23_18 21232 22122 - 3.A.1.4.10
pfam HRGMv2_2447_23 HRGMv2_2447_23_19 22342 23145 - DHquinase_I
TC HRGMv2_2447_23 HRGMv2_2447_23_20 23315 24484 - 3.A.1.4.10
Gene ID: HRGMv2_2447_23_11
Type: TC
Location: 9808 - 10710 (-)
Gene ID: HRGMv2_2447_23_12
Type: CAZyme
Location: 10973 - 17254 (-)
Gene ID: HRGMv2_2447_23_13
Type: TF
Location: 17492 - 17845 (-)
Gene ID: HRGMv2_2447_23_14
Type: TC
Location: 18042 - 18662 (-)
Gene ID: HRGMv2_2447_23_15
Type: TC
Location: 18674 - 19384 (-)
Gene ID: HRGMv2_2447_23_16
Type: TC
Location: 19397 - 20158 (-)
Gene ID: HRGMv2_2447_23_17
Type: TC
Location: 20158 - 21222 (-)
Gene ID: HRGMv2_2447_23_18
Type: TC
Location: 21232 - 22122 (-)
Gene ID: HRGMv2_2447_23_19
Type: pfam
Location: 22342 - 23145 (-)
Gene ID: HRGMv2_2447_23_20
Type: TC
Location: 23315 - 24484 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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