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Cluster: HRGMv2_2447_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2447_22 HRGMv2_2447_22_28 38630 41236 + CBM32 | GH43_33
TF HRGMv2_2447_22 HRGMv2_2447_22_29 41533 42615 + LacI
CAZyme HRGMv2_2447_22 HRGMv2_2447_22_30 42897 44849 + GH127
TC HRGMv2_2447_22 HRGMv2_2447_22_31 44863 45762 + 3.A.1.1.34
TC HRGMv2_2447_22 HRGMv2_2447_22_32 45762 46607 + 3.A.1.1.34
CAZyme HRGMv2_2447_22 HRGMv2_2447_22_33 46738 48249 + GH51_1
TC HRGMv2_2447_22 HRGMv2_2447_22_34 48424 49761 + 3.A.1.1.34
pfam HRGMv2_2447_22 HRGMv2_2447_22_35 50079 53351 + UvrD-helicase | AAA_11 | AAA_19 | UvrD_C | UvrD_C | UvrD_C_2
pfam HRGMv2_2447_22 HRGMv2_2447_22_36 53395 54312 + S1 | S1_2 | S1_2 | CvfB_WH | CvfB_2nd
CAZyme HRGMv2_2447_22 HRGMv2_2447_22_37 54538 56676 + GH127
Gene ID: HRGMv2_2447_22_28
Type: CAZyme
Location: 38630 - 41236 (+)
Gene ID: HRGMv2_2447_22_29
Type: TF
Location: 41533 - 42615 (+)
Gene ID: HRGMv2_2447_22_30
Type: CAZyme
Location: 42897 - 44849 (+)
Gene ID: HRGMv2_2447_22_31
Type: TC
Location: 44863 - 45762 (+)
Gene ID: HRGMv2_2447_22_32
Type: TC
Location: 45762 - 46607 (+)
Gene ID: HRGMv2_2447_22_33
Type: CAZyme
Location: 46738 - 48249 (+)
Gene ID: HRGMv2_2447_22_34
Type: TC
Location: 48424 - 49761 (+)
Gene ID: HRGMv2_2447_22_35
Type: pfam
Location: 50079 - 53351 (+)
Gene ID: HRGMv2_2447_22_36
Type: pfam
Location: 53395 - 54312 (+)
Gene ID: HRGMv2_2447_22_37
Type: CAZyme
Location: 54538 - 56676 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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