Cluster: HRGMv2_2447_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2447
- CGC Family ID: CGCFAM_00046
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2447_59 | HRGMv2_2447_59_11 | 7872 | 9818 | + | 4.A.1.2.1 |
| CAZyme | HRGMv2_2447_59 | HRGMv2_2447_59_12 | 9897 | 11306 | + | GH32 |
| peptidase | HRGMv2_2447_59 | HRGMv2_2447_59_13 | 11444 | 12868 | + | S11.UPW |
| TC | HRGMv2_2447_59 | HRGMv2_2447_59_14 | 12874 | 13665 | + | 3.A.1.3.25 |
| pfam | HRGMv2_2447_59 | HRGMv2_2447_59_15 | 14286 | 17441 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| CAZyme | HRGMv2_2447_59 | HRGMv2_2447_59_16 | 17446 | 19920 | + | GT35 |
Gene ID: HRGMv2_2447_59_11
Type: TC
Location: 7872 - 9818 (+)
Type: TC
Location: 7872 - 9818 (+)
Gene ID: HRGMv2_2447_59_12
Type: CAZyme
Location: 9897 - 11306 (+)
Type: CAZyme
Location: 9897 - 11306 (+)
Gene ID: HRGMv2_2447_59_13
Type: peptidase
Location: 11444 - 12868 (+)
Type: peptidase
Location: 11444 - 12868 (+)
Gene ID: HRGMv2_2447_59_14
Type: TC
Location: 12874 - 13665 (+)
Type: TC
Location: 12874 - 13665 (+)
Gene ID: HRGMv2_2447_59_15
Type: pfam
Location: 14286 - 17441 (+)
Type: pfam
Location: 14286 - 17441 (+)
Gene ID: HRGMv2_2447_59_16
Type: CAZyme
Location: 17446 - 19920 (+)
Type: CAZyme
Location: 17446 - 19920 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.