Cluster: HRGMv2_2447_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2447
- CGC Family ID: CGCFAM_10082
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2447_33 | HRGMv2_2447_33_74 | 80834 | 82222 | - | 9.B.18.1.3 |
| pfam | HRGMv2_2447_33 | HRGMv2_2447_33_75 | 82388 | 83485 | - | FAD_binding_3 | GLF | NAD_binding_8 |
| pfam | HRGMv2_2447_33 | HRGMv2_2447_33_76 | 83514 | 86105 | - | YfhO |
| CAZyme | HRGMv2_2447_33 | HRGMv2_2447_33_77 | 86161 | 87105 | - | GT2 |
| CAZyme | HRGMv2_2447_33 | HRGMv2_2447_33_78 | 87120 | 88247 | - | GT2 |
| CAZyme | HRGMv2_2447_33 | HRGMv2_2447_33_79 | 88280 | 90424 | - | GT2 |
| pfam | HRGMv2_2447_33 | HRGMv2_2447_33_80 | 90449 | 91615 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | HRGMv2_2447_33 | HRGMv2_2447_33_81 | 91740 | 92777 | - | GT2 |
| CAZyme | HRGMv2_2447_33 | HRGMv2_2447_33_82 | 92818 | 93849 | - | GT2 |
| pfam | HRGMv2_2447_33 | HRGMv2_2447_33_83 | 93855 | 95030 | - | Glyphos_transf |
| CAZyme | HRGMv2_2447_33 | HRGMv2_2447_33_84 | 95030 | 95980 | - | GT2 |
| TC | HRGMv2_2447_33 | HRGMv2_2447_33_85 | 96040 | 96864 | - | 3.A.1.104.2 |
| TC | HRGMv2_2447_33 | HRGMv2_2447_33_86 | 96875 | 97678 | - | 3.A.1.104.1 |
Gene ID: HRGMv2_2447_33_74
Type: TC
Location: 80834 - 82222 (-)
Type: TC
Location: 80834 - 82222 (-)
Gene ID: HRGMv2_2447_33_75
Type: pfam
Location: 82388 - 83485 (-)
Type: pfam
Location: 82388 - 83485 (-)
Gene ID: HRGMv2_2447_33_76
Type: pfam
Location: 83514 - 86105 (-)
Type: pfam
Location: 83514 - 86105 (-)
Gene ID: HRGMv2_2447_33_77
Type: CAZyme
Location: 86161 - 87105 (-)
Type: CAZyme
Location: 86161 - 87105 (-)
Gene ID: HRGMv2_2447_33_78
Type: CAZyme
Location: 87120 - 88247 (-)
Type: CAZyme
Location: 87120 - 88247 (-)
Gene ID: HRGMv2_2447_33_79
Type: CAZyme
Location: 88280 - 90424 (-)
Type: CAZyme
Location: 88280 - 90424 (-)
Gene ID: HRGMv2_2447_33_80
Type: pfam
Location: 90449 - 91615 (-)
Type: pfam
Location: 90449 - 91615 (-)
Gene ID: HRGMv2_2447_33_81
Type: CAZyme
Location: 91740 - 92777 (-)
Type: CAZyme
Location: 91740 - 92777 (-)
Gene ID: HRGMv2_2447_33_82
Type: CAZyme
Location: 92818 - 93849 (-)
Type: CAZyme
Location: 92818 - 93849 (-)
Gene ID: HRGMv2_2447_33_83
Type: pfam
Location: 93855 - 95030 (-)
Type: pfam
Location: 93855 - 95030 (-)
Gene ID: HRGMv2_2447_33_84
Type: CAZyme
Location: 95030 - 95980 (-)
Type: CAZyme
Location: 95030 - 95980 (-)
Gene ID: HRGMv2_2447_33_85
Type: TC
Location: 96040 - 96864 (-)
Type: TC
Location: 96040 - 96864 (-)
Gene ID: HRGMv2_2447_33_86
Type: TC
Location: 96875 - 97678 (-)
Type: TC
Location: 96875 - 97678 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.