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Cluster: HRGMv2_2445_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2445_6 HRGMv2_2445_6_3 3694 4920 + 2.A.49.9.2
TC HRGMv2_2445_6 HRGMv2_2445_6_4 5064 5876 + 3.A.1.3.27
TC HRGMv2_2445_6 HRGMv2_2445_6_5 5956 6648 + 3.A.1.3.15
TC HRGMv2_2445_6 HRGMv2_2445_6_6 6638 7408 + 3.A.1.3.25
NULL(UNKNOWN) HRGMv2_2445_6 HRGMv2_2445_6_7 8902 9078 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2445_6 HRGMv2_2445_6_8 9155 10681 + 2.A.66.4.2
TC HRGMv2_2445_6 HRGMv2_2445_6_9 10674 12092 + 9.B.67.1.1
CAZyme HRGMv2_2445_6 HRGMv2_2445_6_10 12085 13224 + GT4
pfam HRGMv2_2445_6 HRGMv2_2445_6_11 13205 13684 + DUF4330
pfam HRGMv2_2445_6 HRGMv2_2445_6_12 13681 14169 + DUF4330
CAZyme HRGMv2_2445_6 HRGMv2_2445_6_13 14193 16424 + GT4
CAZyme HRGMv2_2445_6 HRGMv2_2445_6_14 16434 17159 + GT26
TC HRGMv2_2445_6 HRGMv2_2445_6_15 17304 18179 + 2.A.115.1.1
pfam HRGMv2_2445_6 HRGMv2_2445_6_16 18442 19536 + HTH_30 | GGDEF_2
TC HRGMv2_2445_6 HRGMv2_2445_6_17 19578 20264 + 3.A.1.140.1
pfam HRGMv2_2445_6 HRGMv2_2445_6_18 20254 21156 + FtsX | FtsX_ECD
pfam HRGMv2_2445_6 HRGMv2_2445_6_19 21583 22746 + CMAS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2445_6 HRGMv2_2445_6_20 23010 24185 + 9.B.174.1.1
TC HRGMv2_2445_6 HRGMv2_2445_6_21 24366 24953 + 9.B.149.1.11
Gene ID: HRGMv2_2445_6_3
Type: TC
Location: 3694 - 4920 (+)
Gene ID: HRGMv2_2445_6_4
Type: TC
Location: 5064 - 5876 (+)
Gene ID: HRGMv2_2445_6_5
Type: TC
Location: 5956 - 6648 (+)
Gene ID: HRGMv2_2445_6_6
Type: TC
Location: 6638 - 7408 (+)
Gene ID: HRGMv2_2445_6_7
Type:
Location: 8902 - 9078 (+)
Gene ID: HRGMv2_2445_6_8
Type: TC
Location: 9155 - 10681 (+)
Gene ID: HRGMv2_2445_6_9
Type: TC
Location: 10674 - 12092 (+)
Gene ID: HRGMv2_2445_6_10
Type: CAZyme
Location: 12085 - 13224 (+)
Gene ID: HRGMv2_2445_6_11
Type: pfam
Location: 13205 - 13684 (+)
Gene ID: HRGMv2_2445_6_12
Type: pfam
Location: 13681 - 14169 (+)
Gene ID: HRGMv2_2445_6_13
Type: CAZyme
Location: 14193 - 16424 (+)
Gene ID: HRGMv2_2445_6_14
Type: CAZyme
Location: 16434 - 17159 (+)
Gene ID: HRGMv2_2445_6_15
Type: TC
Location: 17304 - 18179 (+)
Gene ID: HRGMv2_2445_6_16
Type: pfam
Location: 18442 - 19536 (+)
Gene ID: HRGMv2_2445_6_17
Type: TC
Location: 19578 - 20264 (+)
Gene ID: HRGMv2_2445_6_18
Type: pfam
Location: 20254 - 21156 (+)
Gene ID: HRGMv2_2445_6_19
Type: pfam
Location: 21583 - 22746 (+)
Gene ID: HRGMv2_2445_6_20
Type: TC
Location: 23010 - 24185 (+)
Gene ID: HRGMv2_2445_6_21
Type: TC
Location: 24366 - 24953 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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