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Cluster: HRGMv2_2444_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2444_5 HRGMv2_2444_5_9 4790 6274 + GH77
pfam HRGMv2_2444_5 HRGMv2_2444_5_10 6289 6948 + TENA_THI-4
TC HRGMv2_2444_5 HRGMv2_2444_5_11 6951 7703 + 3.A.1.17.8
TC HRGMv2_2444_5 HRGMv2_2444_5_12 7700 8449 + 3.A.1.17.8
STP HRGMv2_2444_5 HRGMv2_2444_5_13 8583 9119 + ANTAR
TC HRGMv2_2444_5 HRGMv2_2444_5_14 9236 9757 - 3.A.1.26.5
pfam HRGMv2_2444_5 HRGMv2_2444_5_15 10084 11463 + MatE | MatE
TC HRGMv2_2444_5 HRGMv2_2444_5_16 11505 12209 - 2.A.122.1.6
TC HRGMv2_2444_5 HRGMv2_2444_5_17 12212 12577 - 1.E.14.1.17
Gene ID: HRGMv2_2444_5_9
Type: CAZyme
Location: 4790 - 6274 (+)
Gene ID: HRGMv2_2444_5_10
Type: pfam
Location: 6289 - 6948 (+)
Gene ID: HRGMv2_2444_5_11
Type: TC
Location: 6951 - 7703 (+)
Gene ID: HRGMv2_2444_5_12
Type: TC
Location: 7700 - 8449 (+)
Gene ID: HRGMv2_2444_5_13
Type: STP
Location: 8583 - 9119 (+)
Gene ID: HRGMv2_2444_5_14
Type: TC
Location: 9236 - 9757 (-)
Gene ID: HRGMv2_2444_5_15
Type: pfam
Location: 10084 - 11463 (+)
Gene ID: HRGMv2_2444_5_16
Type: TC
Location: 11505 - 12209 (-)
Gene ID: HRGMv2_2444_5_17
Type: TC
Location: 12212 - 12577 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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