Cluster: HRGMv2_2443_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2443
- CGC Family ID: CGCFAM_01663
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2443_28 | HRGMv2_2443_28_19 | 16055 | 17494 | - | GT5 |
| NULL(UNKNOWN) | HRGMv2_2443_28 | HRGMv2_2443_28_20 | 17689 | 17970 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2443_28 | HRGMv2_2443_28_21 | 18043 | 18384 | + | Sigma70_r4 |
| TC | HRGMv2_2443_28 | HRGMv2_2443_28_22 | 18388 | 19728 | + | 3.A.5.2.2 |
Gene ID: HRGMv2_2443_28_19
Type: CAZyme
Location: 16055 - 17494 (-)
Type: CAZyme
Location: 16055 - 17494 (-)
Gene ID: HRGMv2_2443_28_20
Type:
Location: 17689 - 17970 (+)
Type:
Location: 17689 - 17970 (+)
Gene ID: HRGMv2_2443_28_21
Type: STP
Location: 18043 - 18384 (+)
Type: STP
Location: 18043 - 18384 (+)
Gene ID: HRGMv2_2443_28_22
Type: TC
Location: 18388 - 19728 (+)
Type: TC
Location: 18388 - 19728 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Pseudolachnospira
Species
Pseudolachnospira sp022867805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.