Cluster: HRGMv2_2443_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2443
- CGC Family ID: CGCFAM_05272
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2443_17 | HRGMv2_2443_17_26 | 33453 | 34853 | - | 2.A.66.1.32 |
| TC | HRGMv2_2443_17 | HRGMv2_2443_17_27 | 35065 | 36015 | - | 8.A.21.2.2 |
| pfam | HRGMv2_2443_17 | HRGMv2_2443_17_28 | 36009 | 36455 | - | NfeD |
| CAZyme | HRGMv2_2443_17 | HRGMv2_2443_17_29 | 36884 | 37825 | + | CE4 |
| CAZyme | HRGMv2_2443_17 | HRGMv2_2443_17_30 | 37870 | 38697 | + | CE4 |
Gene ID: HRGMv2_2443_17_26
Type: TC
Location: 33453 - 34853 (-)
Type: TC
Location: 33453 - 34853 (-)
Gene ID: HRGMv2_2443_17_27
Type: TC
Location: 35065 - 36015 (-)
Type: TC
Location: 35065 - 36015 (-)
Gene ID: HRGMv2_2443_17_28
Type: pfam
Location: 36009 - 36455 (-)
Type: pfam
Location: 36009 - 36455 (-)
Gene ID: HRGMv2_2443_17_29
Type: CAZyme
Location: 36884 - 37825 (+)
Type: CAZyme
Location: 36884 - 37825 (+)
Gene ID: HRGMv2_2443_17_30
Type: CAZyme
Location: 37870 - 38697 (+)
Type: CAZyme
Location: 37870 - 38697 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Pseudolachnospira
Species
Pseudolachnospira sp022867805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.