Cluster: HRGMv2_2443_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2443
- CGC Family ID: CGCFAM_04351
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2443_12 | HRGMv2_2443_12_6 | 9150 | 10064 | + | 2.A.4.7.9 |
| TC | HRGMv2_2443_12 | HRGMv2_2443_12_7 | 10112 | 11767 | - | 3.A.1.135.5 |
| TC | HRGMv2_2443_12 | HRGMv2_2443_12_8 | 11757 | 13499 | - | 3.A.1.117.2 |
| TF | HRGMv2_2443_12 | HRGMv2_2443_12_9 | 13496 | 14005 | - | MarR |
| CAZyme | HRGMv2_2443_12 | HRGMv2_2443_12_10 | 14123 | 15403 | - | GH18 |
Gene ID: HRGMv2_2443_12_6
Type: TC
Location: 9150 - 10064 (+)
Type: TC
Location: 9150 - 10064 (+)
Gene ID: HRGMv2_2443_12_7
Type: TC
Location: 10112 - 11767 (-)
Type: TC
Location: 10112 - 11767 (-)
Gene ID: HRGMv2_2443_12_8
Type: TC
Location: 11757 - 13499 (-)
Type: TC
Location: 11757 - 13499 (-)
Gene ID: HRGMv2_2443_12_9
Type: TF
Location: 13496 - 14005 (-)
Type: TF
Location: 13496 - 14005 (-)
Gene ID: HRGMv2_2443_12_10
Type: CAZyme
Location: 14123 - 15403 (-)
Type: CAZyme
Location: 14123 - 15403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Pseudolachnospira
Species
Pseudolachnospira sp022867805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.