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Cluster: HRGMv2_2443_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2443_3 HRGMv2_2443_3_26 27362 29044 + GH2
TF HRGMv2_2443_3 HRGMv2_2443_3_27 29079 30704 - HTH_AraC | HTH_AraC
TC HRGMv2_2443_3 HRGMv2_2443_3_28 30889 31851 + 3.A.1.5.11
TC HRGMv2_2443_3 HRGMv2_2443_3_29 31844 32728 + 3.A.1.5.39
TC HRGMv2_2443_3 HRGMv2_2443_3_30 32739 33788 + 3.A.1.5.2
TC HRGMv2_2443_3 HRGMv2_2443_3_31 33792 34751 + 3.A.1.5.20
TC HRGMv2_2443_3 HRGMv2_2443_3_32 34791 36440 + 3.A.1.5.42
peptidase HRGMv2_2443_3 HRGMv2_2443_3_33 36450 38219 + S15.UNW
STP HRGMv2_2443_3 HRGMv2_2443_3_34 38633 39763 + SBP_bac_1
TC HRGMv2_2443_3 HRGMv2_2443_3_35 39872 40648 + 3.A.1.11.1
TC HRGMv2_2443_3 HRGMv2_2443_3_36 40731 41540 + 3.A.1.11.6
TC HRGMv2_2443_3 HRGMv2_2443_3_37 41569 42624 + 3.A.1.20.2
Gene ID: HRGMv2_2443_3_26
Type: CAZyme
Location: 27362 - 29044 (+)
Gene ID: HRGMv2_2443_3_27
Type: TF
Location: 29079 - 30704 (-)
Gene ID: HRGMv2_2443_3_28
Type: TC
Location: 30889 - 31851 (+)
Gene ID: HRGMv2_2443_3_29
Type: TC
Location: 31844 - 32728 (+)
Gene ID: HRGMv2_2443_3_30
Type: TC
Location: 32739 - 33788 (+)
Gene ID: HRGMv2_2443_3_31
Type: TC
Location: 33792 - 34751 (+)
Gene ID: HRGMv2_2443_3_32
Type: TC
Location: 34791 - 36440 (+)
Gene ID: HRGMv2_2443_3_33
Type: peptidase
Location: 36450 - 38219 (+)
Gene ID: HRGMv2_2443_3_34
Type: STP
Location: 38633 - 39763 (+)
Gene ID: HRGMv2_2443_3_35
Type: TC
Location: 39872 - 40648 (+)
Gene ID: HRGMv2_2443_3_36
Type: TC
Location: 40731 - 41540 (+)
Gene ID: HRGMv2_2443_3_37
Type: TC
Location: 41569 - 42624 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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