Cluster: HRGMv2_2443_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2443
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2443_89 | HRGMv2_2443_89_3 | 4445 | 4675 | - | 3.D.1.6.4 |
| pfam | HRGMv2_2443_89 | HRGMv2_2443_89_4 | 5018 | 6016 | - | FA_synthesis |
| TC | HRGMv2_2443_89 | HRGMv2_2443_89_5 | 6248 | 7192 | + | 8.A.5.1.7 |
| pfam | HRGMv2_2443_89 | HRGMv2_2443_89_6 | 7266 | 8657 | - | HATPase_c_5 |
| TF | HRGMv2_2443_89 | HRGMv2_2443_89_7 | 8654 | 9367 | - | LytTR |
| CAZyme | HRGMv2_2443_89 | HRGMv2_2443_89_8 | 9666 | 10592 | - | GH43_24 |
Gene ID: HRGMv2_2443_89_3
Type: TC
Location: 4445 - 4675 (-)
Type: TC
Location: 4445 - 4675 (-)
Gene ID: HRGMv2_2443_89_4
Type: pfam
Location: 5018 - 6016 (-)
Type: pfam
Location: 5018 - 6016 (-)
Gene ID: HRGMv2_2443_89_5
Type: TC
Location: 6248 - 7192 (+)
Type: TC
Location: 6248 - 7192 (+)
Gene ID: HRGMv2_2443_89_6
Type: pfam
Location: 7266 - 8657 (-)
Type: pfam
Location: 7266 - 8657 (-)
Gene ID: HRGMv2_2443_89_7
Type: TF
Location: 8654 - 9367 (-)
Type: TF
Location: 8654 - 9367 (-)
Gene ID: HRGMv2_2443_89_8
Type: CAZyme
Location: 9666 - 10592 (-)
Type: CAZyme
Location: 9666 - 10592 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Pseudolachnospira
Species
Pseudolachnospira sp022867805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.