Cluster: HRGMv2_2443_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2443
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2443_2 | HRGMv2_2443_2_43 | 61934 | 63427 | - | GH77 |
| NULL(UNKNOWN) | HRGMv2_2443_2 | HRGMv2_2443_2_44 | 63463 | 63957 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2443_2 | HRGMv2_2443_2_45 | 63941 | 64816 | - | HTH_30 | GGDEF_2 |
| TC | HRGMv2_2443_2 | HRGMv2_2443_2_46 | 64905 | 66023 | - | 3.A.1.1.26 |
| STP | HRGMv2_2443_2 | HRGMv2_2443_2_47 | 66205 | 67533 | + | HD |
| CAZyme | HRGMv2_2443_2 | HRGMv2_2443_2_48 | 67547 | 68335 | + | CE4 |
Gene ID: HRGMv2_2443_2_43
Type: CAZyme
Location: 61934 - 63427 (-)
Type: CAZyme
Location: 61934 - 63427 (-)
Gene ID: HRGMv2_2443_2_44
Type:
Location: 63463 - 63957 (-)
Type:
Location: 63463 - 63957 (-)
Gene ID: HRGMv2_2443_2_45
Type: pfam
Location: 63941 - 64816 (-)
Type: pfam
Location: 63941 - 64816 (-)
Gene ID: HRGMv2_2443_2_46
Type: TC
Location: 64905 - 66023 (-)
Type: TC
Location: 64905 - 66023 (-)
Gene ID: HRGMv2_2443_2_47
Type: STP
Location: 66205 - 67533 (+)
Type: STP
Location: 66205 - 67533 (+)
Gene ID: HRGMv2_2443_2_48
Type: CAZyme
Location: 67547 - 68335 (+)
Type: CAZyme
Location: 67547 - 68335 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Pseudolachnospira
Species
Pseudolachnospira sp022867805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.