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Cluster: HRGMv2_2442_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2442_23 HRGMv2_2442_23_27 28471 29892 - GH29
TC HRGMv2_2442_23 HRGMv2_2442_23_28 30037 31635 - 3.A.18.1.1
TC HRGMv2_2442_23 HRGMv2_2442_23_29 32007 32669 + 1.C.113.1.2
STP HRGMv2_2442_23 HRGMv2_2442_23_30 32760 33515 - Response_reg | Spo0A_C
pfam HRGMv2_2442_23 HRGMv2_2442_23_31 33684 35162 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_2442_23 HRGMv2_2442_23_32 35165 35866 + 3.A.1.122.2
TC HRGMv2_2442_23 HRGMv2_2442_23_33 35863 37197 + 3.A.1.122.2
Gene ID: HRGMv2_2442_23_27
Type: CAZyme
Location: 28471 - 29892 (-)
Gene ID: HRGMv2_2442_23_28
Type: TC
Location: 30037 - 31635 (-)
Gene ID: HRGMv2_2442_23_29
Type: TC
Location: 32007 - 32669 (+)
Gene ID: HRGMv2_2442_23_30
Type: STP
Location: 32760 - 33515 (-)
Gene ID: HRGMv2_2442_23_31
Type: pfam
Location: 33684 - 35162 (+)
Gene ID: HRGMv2_2442_23_32
Type: TC
Location: 35165 - 35866 (+)
Gene ID: HRGMv2_2442_23_33
Type: TC
Location: 35863 - 37197 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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