Cluster: HRGMv2_2442_CGC15
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2442
- CGC Family ID: CGCFAM_00009
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2442_11 | HRGMv2_2442_11_122 | 153955 | 155346 | + | 3.A.1.104.1 |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_123 | 155480 | 155926 | + | GtrA_DPMS_TM |
| TC | HRGMv2_2442_11 | HRGMv2_2442_11_124 | 155945 | 157288 | + | 3.A.1.103.6 |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_125 | 157300 | 158259 | + | RrnaAD | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| NULL(UNKNOWN) | HRGMv2_2442_11 | HRGMv2_2442_11_126 | 158261 | 159718 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_127 | 159742 | 162243 | + | GT2 | GT2 |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_128 | 162264 | 164843 | + | Sulfatase |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_129 | 165012 | 167522 | - | DUF7654 | DUF7657 |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_130 | 167522 | 168475 | - | GT2 |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_131 | 168928 | 170982 | + | GT2 |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_132 | 171108 | 173657 | + | Dockerin_1 | Amidase_3 | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_133 | 173681 | 175651 | + | GH73 |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_134 | 175720 | 176838 | - | GT4 |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_135 | 177038 | 178771 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_136 | 178999 | 180723 | - | LytR_cpsA_psr |
| TC | HRGMv2_2442_11 | HRGMv2_2442_11_137 | 180745 | 182148 | - | 9.B.18.1.1 |
Gene ID: HRGMv2_2442_11_122
Type: TC
Location: 153955 - 155346 (+)
Type: TC
Location: 153955 - 155346 (+)
Gene ID: HRGMv2_2442_11_123
Type: pfam
Location: 155480 - 155926 (+)
Type: pfam
Location: 155480 - 155926 (+)
Gene ID: HRGMv2_2442_11_124
Type: TC
Location: 155945 - 157288 (+)
Type: TC
Location: 155945 - 157288 (+)
Gene ID: HRGMv2_2442_11_125
Type: pfam
Location: 157300 - 158259 (+)
Type: pfam
Location: 157300 - 158259 (+)
Gene ID: HRGMv2_2442_11_126
Type:
Location: 158261 - 159718 (+)
Type:
Location: 158261 - 159718 (+)
Gene ID: HRGMv2_2442_11_127
Type: CAZyme
Location: 159742 - 162243 (+)
Type: CAZyme
Location: 159742 - 162243 (+)
Gene ID: HRGMv2_2442_11_128
Type: pfam
Location: 162264 - 164843 (+)
Type: pfam
Location: 162264 - 164843 (+)
Gene ID: HRGMv2_2442_11_129
Type: pfam
Location: 165012 - 167522 (-)
Type: pfam
Location: 165012 - 167522 (-)
Gene ID: HRGMv2_2442_11_130
Type: CAZyme
Location: 167522 - 168475 (-)
Type: CAZyme
Location: 167522 - 168475 (-)
Gene ID: HRGMv2_2442_11_131
Type: CAZyme
Location: 168928 - 170982 (+)
Type: CAZyme
Location: 168928 - 170982 (+)
Gene ID: HRGMv2_2442_11_132
Type: pfam
Location: 171108 - 173657 (+)
Type: pfam
Location: 171108 - 173657 (+)
Gene ID: HRGMv2_2442_11_133
Type: CAZyme
Location: 173681 - 175651 (+)
Type: CAZyme
Location: 173681 - 175651 (+)
Gene ID: HRGMv2_2442_11_134
Type: CAZyme
Location: 175720 - 176838 (-)
Type: CAZyme
Location: 175720 - 176838 (-)
Gene ID: HRGMv2_2442_11_135
Type: pfam
Location: 177038 - 178771 (+)
Type: pfam
Location: 177038 - 178771 (+)
Gene ID: HRGMv2_2442_11_136
Type: pfam
Location: 178999 - 180723 (-)
Type: pfam
Location: 178999 - 180723 (-)
Gene ID: HRGMv2_2442_11_137
Type: TC
Location: 180745 - 182148 (-)
Type: TC
Location: 180745 - 182148 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAJJNI01
Species
CAJJNI01 sp905193085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.