Cluster: HRGMv2_2442_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2442
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2442_11 | HRGMv2_2442_11_30 | 30694 | 31713 | - | 3.A.1.17.4 |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_31 | 31778 | 32686 | - | Arginase |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_32 | 32864 | 33535 | - | Cyclase |
| TC | HRGMv2_2442_11 | HRGMv2_2442_11_33 | 33555 | 34586 | - | 3.A.1.17.2 |
| TF | HRGMv2_2442_11 | HRGMv2_2442_11_34 | 34783 | 35646 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_35 | 35949 | 38552 | + | CBM67 | GH78 |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_36 | 38636 | 39610 | + | HMGL-like |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_37 | 39691 | 40734 | + | GH137 |
| pfam | HRGMv2_2442_11 | HRGMv2_2442_11_38 | 40753 | 41400 | + | Hydrolase | Hydrolase_3 | HAD | Hydrolase_like | HAD_2 |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_39 | 41561 | 43585 | + | GH42 |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_40 | 43604 | 45643 | + | GH42 |
| CAZyme | HRGMv2_2442_11 | HRGMv2_2442_11_41 | 45734 | 48838 | + | GH106 |
Gene ID: HRGMv2_2442_11_30
Type: TC
Location: 30694 - 31713 (-)
Type: TC
Location: 30694 - 31713 (-)
Gene ID: HRGMv2_2442_11_31
Type: pfam
Location: 31778 - 32686 (-)
Type: pfam
Location: 31778 - 32686 (-)
Gene ID: HRGMv2_2442_11_32
Type: pfam
Location: 32864 - 33535 (-)
Type: pfam
Location: 32864 - 33535 (-)
Gene ID: HRGMv2_2442_11_33
Type: TC
Location: 33555 - 34586 (-)
Type: TC
Location: 33555 - 34586 (-)
Gene ID: HRGMv2_2442_11_34
Type: TF
Location: 34783 - 35646 (-)
Type: TF
Location: 34783 - 35646 (-)
Gene ID: HRGMv2_2442_11_35
Type: CAZyme
Location: 35949 - 38552 (+)
Type: CAZyme
Location: 35949 - 38552 (+)
Gene ID: HRGMv2_2442_11_36
Type: pfam
Location: 38636 - 39610 (+)
Type: pfam
Location: 38636 - 39610 (+)
Gene ID: HRGMv2_2442_11_37
Type: CAZyme
Location: 39691 - 40734 (+)
Type: CAZyme
Location: 39691 - 40734 (+)
Gene ID: HRGMv2_2442_11_38
Type: pfam
Location: 40753 - 41400 (+)
Type: pfam
Location: 40753 - 41400 (+)
Gene ID: HRGMv2_2442_11_39
Type: CAZyme
Location: 41561 - 43585 (+)
Type: CAZyme
Location: 41561 - 43585 (+)
Gene ID: HRGMv2_2442_11_40
Type: CAZyme
Location: 43604 - 45643 (+)
Type: CAZyme
Location: 43604 - 45643 (+)
Gene ID: HRGMv2_2442_11_41
Type: CAZyme
Location: 45734 - 48838 (+)
Type: CAZyme
Location: 45734 - 48838 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAJJNI01
Species
CAJJNI01 sp905193085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.