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Cluster: HRGMv2_2437_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2437_2 HRGMv2_2437_2_149 173441 174826 - 2.A.66.1.28
pfam HRGMv2_2437_2 HRGMv2_2437_2_150 174899 175762 - DUF362
TF HRGMv2_2437_2 HRGMv2_2437_2_151 175936 176280 + HTH_3
CAZyme HRGMv2_2437_2 HRGMv2_2437_2_152 176308 178194 - CBM48 | GH13_9
pfam HRGMv2_2437_2 HRGMv2_2437_2_153 178326 178832 + LRR_5
STP HRGMv2_2437_2 HRGMv2_2437_2_154 178849 179349 - HD
TC HRGMv2_2437_2 HRGMv2_2437_2_155 179351 180235 - 9.B.34.1.3
TC HRGMv2_2437_2 HRGMv2_2437_2_156 180244 180789 - 2.A.107.1.2
pfam HRGMv2_2437_2 HRGMv2_2437_2_157 181004 182299 - Enolase_C | Enolase_N
TF HRGMv2_2437_2 HRGMv2_2437_2_158 182403 183008 - GntR
TC HRGMv2_2437_2 HRGMv2_2437_2_159 183082 183687 - 2.A.51.1.6
TC HRGMv2_2437_2 HRGMv2_2437_2_160 183684 184226 - 2.A.51.1.6
Gene ID: HRGMv2_2437_2_149
Type: TC
Location: 173441 - 174826 (-)
Gene ID: HRGMv2_2437_2_150
Type: pfam
Location: 174899 - 175762 (-)
Gene ID: HRGMv2_2437_2_151
Type: TF
Location: 175936 - 176280 (+)
Gene ID: HRGMv2_2437_2_152
Type: CAZyme
Location: 176308 - 178194 (-)
Gene ID: HRGMv2_2437_2_153
Type: pfam
Location: 178326 - 178832 (+)
Gene ID: HRGMv2_2437_2_154
Type: STP
Location: 178849 - 179349 (-)
Gene ID: HRGMv2_2437_2_155
Type: TC
Location: 179351 - 180235 (-)
Gene ID: HRGMv2_2437_2_156
Type: TC
Location: 180244 - 180789 (-)
Gene ID: HRGMv2_2437_2_157
Type: pfam
Location: 181004 - 182299 (-)
Gene ID: HRGMv2_2437_2_158
Type: TF
Location: 182403 - 183008 (-)
Gene ID: HRGMv2_2437_2_159
Type: TC
Location: 183082 - 183687 (-)
Gene ID: HRGMv2_2437_2_160
Type: TC
Location: 183684 - 184226 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
TWA4
→
Species
TWA4 sp902496125

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2437_2_157 vegan > omnivore 1.61879 0.04112

🧭 Explore Read Mapping of CGC

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