Cluster: HRGMv2_2437_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2437
- CGC Family ID: CGCFAM_00125
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2437_8 | HRGMv2_2437_8_26 | 20482 | 21420 | + | GT2 |
| pfam | HRGMv2_2437_8 | HRGMv2_2437_8_27 | 21464 | 22639 | - | AICARFT_IMPCHas |
| pfam | HRGMv2_2437_8 | HRGMv2_2437_8_28 | 22672 | 23385 | - | IMP_cyclohyd |
| TC | HRGMv2_2437_8 | HRGMv2_2437_8_29 | 23464 | 25548 | - | 3.A.7.7.1 |
| pfam | HRGMv2_2437_8 | HRGMv2_2437_8_30 | 25548 | 26558 | - | NAD_Gly3P_dh_N | ApbA | 3HCDH_N | NAD_binding_2 | F420_oxidored | NAD_Gly3P_dh_C | GPD_NAD_C_bact |
| TC | HRGMv2_2437_8 | HRGMv2_2437_8_31 | 26571 | 27206 | - | 9.B.31.1.2 |
Gene ID: HRGMv2_2437_8_26
Type: CAZyme
Location: 20482 - 21420 (+)
Type: CAZyme
Location: 20482 - 21420 (+)
Gene ID: HRGMv2_2437_8_27
Type: pfam
Location: 21464 - 22639 (-)
Type: pfam
Location: 21464 - 22639 (-)
Gene ID: HRGMv2_2437_8_28
Type: pfam
Location: 22672 - 23385 (-)
Type: pfam
Location: 22672 - 23385 (-)
Gene ID: HRGMv2_2437_8_29
Type: TC
Location: 23464 - 25548 (-)
Type: TC
Location: 23464 - 25548 (-)
Gene ID: HRGMv2_2437_8_30
Type: pfam
Location: 25548 - 26558 (-)
Type: pfam
Location: 25548 - 26558 (-)
Gene ID: HRGMv2_2437_8_31
Type: TC
Location: 26571 - 27206 (-)
Type: TC
Location: 26571 - 27206 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
TWA4
Species
TWA4 sp902496125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2437_8_28 | vegan > omnivore | 1.37101 | 0.04112 |
| HRGMv2_2437_8_28 | vegetarian > omnivore | 2.48368 | 0.00455 |