Cluster: HRGMv2_2437_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2437
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2437_5 | HRGMv2_2437_5_45 | 50581 | 51549 | - | 3.A.1.103.4 |
| pfam | HRGMv2_2437_5 | HRGMv2_2437_5_46 | 51562 | 52050 | - | dCMP_cyt_deam_1 | MafB19-deam |
| pfam | HRGMv2_2437_5 | HRGMv2_2437_5_47 | 52193 | 52945 | + | Exo_endo_phos |
| CAZyme | HRGMv2_2437_5 | HRGMv2_2437_5_48 | 52958 | 54904 | + | GH13_11 |
| pfam | HRGMv2_2437_5 | HRGMv2_2437_5_49 | 54927 | 55502 | + | TraX |
| TC | HRGMv2_2437_5 | HRGMv2_2437_5_50 | 55491 | 56561 | - | 3.A.1.10.3 |
| TC | HRGMv2_2437_5 | HRGMv2_2437_5_51 | 56563 | 57270 | - | 3.A.1.8.1 |
Gene ID: HRGMv2_2437_5_45
Type: TC
Location: 50581 - 51549 (-)
Type: TC
Location: 50581 - 51549 (-)
Gene ID: HRGMv2_2437_5_46
Type: pfam
Location: 51562 - 52050 (-)
Type: pfam
Location: 51562 - 52050 (-)
Gene ID: HRGMv2_2437_5_47
Type: pfam
Location: 52193 - 52945 (+)
Type: pfam
Location: 52193 - 52945 (+)
Gene ID: HRGMv2_2437_5_48
Type: CAZyme
Location: 52958 - 54904 (+)
Type: CAZyme
Location: 52958 - 54904 (+)
Gene ID: HRGMv2_2437_5_49
Type: pfam
Location: 54927 - 55502 (+)
Type: pfam
Location: 54927 - 55502 (+)
Gene ID: HRGMv2_2437_5_50
Type: TC
Location: 55491 - 56561 (-)
Type: TC
Location: 55491 - 56561 (-)
Gene ID: HRGMv2_2437_5_51
Type: TC
Location: 56563 - 57270 (-)
Type: TC
Location: 56563 - 57270 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
TWA4
Species
TWA4 sp902496125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.