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Cluster: HRGMv2_2437_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2437_5 HRGMv2_2437_5_15 15322 16434 - 3.A.1.1.26
NULL(UNKNOWN) HRGMv2_2437_5 HRGMv2_2437_5_16 16525 17214 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2437_5 HRGMv2_2437_5_17 17233 19428 - GH36
CAZyme HRGMv2_2437_5 HRGMv2_2437_5_18 19456 21708 - GH36
TF HRGMv2_2437_5 HRGMv2_2437_5_19 21829 22737 + HTH_AraC | HTH_AraC
TC HRGMv2_2437_5 HRGMv2_2437_5_20 22852 23688 - 3.A.1.1.36
TC HRGMv2_2437_5 HRGMv2_2437_5_21 23706 24608 - 3.A.1.1.25
STP HRGMv2_2437_5 HRGMv2_2437_5_22 24733 26052 - SBP_bac_1
TC HRGMv2_2437_5 HRGMv2_2437_5_23 26495 27148 + 9.B.28.1.3
Gene ID: HRGMv2_2437_5_15
Type: TC
Location: 15322 - 16434 (-)
Gene ID: HRGMv2_2437_5_16
Type:
Location: 16525 - 17214 (-)
Gene ID: HRGMv2_2437_5_17
Type: CAZyme
Location: 17233 - 19428 (-)
Gene ID: HRGMv2_2437_5_18
Type: CAZyme
Location: 19456 - 21708 (-)
Gene ID: HRGMv2_2437_5_19
Type: TF
Location: 21829 - 22737 (+)
Gene ID: HRGMv2_2437_5_20
Type: TC
Location: 22852 - 23688 (-)
Gene ID: HRGMv2_2437_5_21
Type: TC
Location: 23706 - 24608 (-)
Gene ID: HRGMv2_2437_5_22
Type: STP
Location: 24733 - 26052 (-)
Gene ID: HRGMv2_2437_5_23
Type: TC
Location: 26495 - 27148 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
TWA4
→
Species
TWA4 sp902496125

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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