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Cluster: HRGMv2_2437_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2437_1 HRGMv2_2437_1_4 2074 3546 + 2.A.22.5.3
pfam HRGMv2_2437_1 HRGMv2_2437_1_5 3559 4404 - ABC-3
TC HRGMv2_2437_1 HRGMv2_2437_1_6 4397 5086 - 3.A.1.15.3
TC HRGMv2_2437_1 HRGMv2_2437_1_7 5088 6044 - 3.A.1.15.11
TF HRGMv2_2437_1 HRGMv2_2437_1_8 6031 6462 - FUR
CAZyme HRGMv2_2437_1 HRGMv2_2437_1_9 6576 8084 - GH77
pfam HRGMv2_2437_1 HRGMv2_2437_1_10 8099 8938 - Exo_endo_phos
TC HRGMv2_2437_1 HRGMv2_2437_1_11 8949 11087 - 4.A.1.1.11
TF HRGMv2_2437_1 HRGMv2_2437_1_12 11347 12375 + LacI
CAZyme HRGMv2_2437_1 HRGMv2_2437_1_13 12414 14672 - GT35
Gene ID: HRGMv2_2437_1_4
Type: TC
Location: 2074 - 3546 (+)
Gene ID: HRGMv2_2437_1_5
Type: pfam
Location: 3559 - 4404 (-)
Gene ID: HRGMv2_2437_1_6
Type: TC
Location: 4397 - 5086 (-)
Gene ID: HRGMv2_2437_1_7
Type: TC
Location: 5088 - 6044 (-)
Gene ID: HRGMv2_2437_1_8
Type: TF
Location: 6031 - 6462 (-)
Gene ID: HRGMv2_2437_1_9
Type: CAZyme
Location: 6576 - 8084 (-)
Gene ID: HRGMv2_2437_1_10
Type: pfam
Location: 8099 - 8938 (-)
Gene ID: HRGMv2_2437_1_11
Type: TC
Location: 8949 - 11087 (-)
Gene ID: HRGMv2_2437_1_12
Type: TF
Location: 11347 - 12375 (+)
Gene ID: HRGMv2_2437_1_13
Type: CAZyme
Location: 12414 - 14672 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
TWA4
→
Species
TWA4 sp902496125

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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