Cluster: HRGMv2_2421_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2421
- CGC Family ID: CGCFAM_00904
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2421_3 | HRGMv2_2421_3_10 | 10040 | 11191 | - | 9.B.174.1.1 |
| pfam | HRGMv2_2421_3 | HRGMv2_2421_3_11 | 11372 | 12103 | - | SIMPL |
| pfam | HRGMv2_2421_3 | HRGMv2_2421_3_12 | 12137 | 13036 | - | FtsX | FtsX_ECD |
| TC | HRGMv2_2421_3 | HRGMv2_2421_3_13 | 13026 | 13709 | - | 3.A.1.140.1 |
| TF | HRGMv2_2421_3 | HRGMv2_2421_3_14 | 13753 | 14844 | - | 0037176 |
| TC | HRGMv2_2421_3 | HRGMv2_2421_3_15 | 15173 | 16015 | - | 2.A.115.1.1 |
| CAZyme | HRGMv2_2421_3 | HRGMv2_2421_3_16 | 16085 | 16807 | - | GT26 |
| CAZyme | HRGMv2_2421_3 | HRGMv2_2421_3_17 | 16843 | 19062 | - | GT4 |
| pfam | HRGMv2_2421_3 | HRGMv2_2421_3_18 | 19090 | 19566 | - | DUF4330 |
| pfam | HRGMv2_2421_3 | HRGMv2_2421_3_19 | 19582 | 20055 | - | DUF4330 |
| CAZyme | HRGMv2_2421_3 | HRGMv2_2421_3_20 | 20067 | 21179 | - | GT4 |
| TC | HRGMv2_2421_3 | HRGMv2_2421_3_21 | 21182 | 22600 | - | 9.B.67.1.1 |
| TC | HRGMv2_2421_3 | HRGMv2_2421_3_22 | 22604 | 24184 | - | 2.A.66.4.5 |
Gene ID: HRGMv2_2421_3_10
Type: TC
Location: 10040 - 11191 (-)
Type: TC
Location: 10040 - 11191 (-)
Gene ID: HRGMv2_2421_3_11
Type: pfam
Location: 11372 - 12103 (-)
Type: pfam
Location: 11372 - 12103 (-)
Gene ID: HRGMv2_2421_3_12
Type: pfam
Location: 12137 - 13036 (-)
Type: pfam
Location: 12137 - 13036 (-)
Gene ID: HRGMv2_2421_3_13
Type: TC
Location: 13026 - 13709 (-)
Type: TC
Location: 13026 - 13709 (-)
Gene ID: HRGMv2_2421_3_14
Type: TF
Location: 13753 - 14844 (-)
Type: TF
Location: 13753 - 14844 (-)
Gene ID: HRGMv2_2421_3_15
Type: TC
Location: 15173 - 16015 (-)
Type: TC
Location: 15173 - 16015 (-)
Gene ID: HRGMv2_2421_3_16
Type: CAZyme
Location: 16085 - 16807 (-)
Type: CAZyme
Location: 16085 - 16807 (-)
Gene ID: HRGMv2_2421_3_17
Type: CAZyme
Location: 16843 - 19062 (-)
Type: CAZyme
Location: 16843 - 19062 (-)
Gene ID: HRGMv2_2421_3_18
Type: pfam
Location: 19090 - 19566 (-)
Type: pfam
Location: 19090 - 19566 (-)
Gene ID: HRGMv2_2421_3_19
Type: pfam
Location: 19582 - 20055 (-)
Type: pfam
Location: 19582 - 20055 (-)
Gene ID: HRGMv2_2421_3_20
Type: CAZyme
Location: 20067 - 21179 (-)
Type: CAZyme
Location: 20067 - 21179 (-)
Gene ID: HRGMv2_2421_3_21
Type: TC
Location: 21182 - 22600 (-)
Type: TC
Location: 21182 - 22600 (-)
Gene ID: HRGMv2_2421_3_22
Type: TC
Location: 22604 - 24184 (-)
Type: TC
Location: 22604 - 24184 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Anaerotignaceae
Genus
Metalachnospira
Species
Metalachnospira gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.