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Cluster: HRGMv2_2417_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2417_3 HRGMv2_2417_3_21 20762 23047 + GH3
peptidase HRGMv2_2417_3 HRGMv2_2417_3_22 23165 24055 - S09.UPW
CAZyme HRGMv2_2417_3 HRGMv2_2417_3_23 24191 26680 - GH2
CAZyme HRGMv2_2417_3 HRGMv2_2417_3_24 26711 29146 - GH94
TF HRGMv2_2417_3 HRGMv2_2417_3_25 29514 30581 + LacI
CAZyme HRGMv2_2417_3 HRGMv2_2417_3_26 30597 32813 + GH3
pfam HRGMv2_2417_3 HRGMv2_2417_3_27 32897 33568 - RelA_SpoT
TC HRGMv2_2417_3 HRGMv2_2417_3_28 33761 34819 - 9.A.23.1.1
Gene ID: HRGMv2_2417_3_21
Type: CAZyme
Location: 20762 - 23047 (+)
Gene ID: HRGMv2_2417_3_22
Type: peptidase
Location: 23165 - 24055 (-)
Gene ID: HRGMv2_2417_3_23
Type: CAZyme
Location: 24191 - 26680 (-)
Gene ID: HRGMv2_2417_3_24
Type: CAZyme
Location: 26711 - 29146 (-)
Gene ID: HRGMv2_2417_3_25
Type: TF
Location: 29514 - 30581 (+)
Gene ID: HRGMv2_2417_3_26
Type: CAZyme
Location: 30597 - 32813 (+)
Gene ID: HRGMv2_2417_3_27
Type: pfam
Location: 32897 - 33568 (-)
Gene ID: HRGMv2_2417_3_28
Type: TC
Location: 33761 - 34819 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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