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Cluster: HRGMv2_2417_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2417_68 HRGMv2_2417_68_1 2 1642 + GH127
NULL(UNKNOWN) HRGMv2_2417_68 HRGMv2_2417_68_2 1642 1800 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2417_68 HRGMv2_2417_68_3 1807 2493 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2417_68 HRGMv2_2417_68_4 2584 3090 + 3.A.1.1.34
TC HRGMv2_2417_68 HRGMv2_2417_68_5 3087 3365 + 3.A.1.1.34
TC HRGMv2_2417_68 HRGMv2_2417_68_6 3367 4254 + 3.A.1.1.34
CAZyme HRGMv2_2417_68 HRGMv2_2417_68_7 4325 5842 + GH43_4
TF HRGMv2_2417_68 HRGMv2_2417_68_8 5900 6829 - HTH_5
CAZyme HRGMv2_2417_68 HRGMv2_2417_68_9 7056 8570 + GH51_1
CAZyme HRGMv2_2417_68 HRGMv2_2417_68_10 8643 10145 + GH51_1
CAZyme HRGMv2_2417_68 HRGMv2_2417_68_11 10170 11711 + CBM91 | GH43_10
Gene ID: HRGMv2_2417_68_1
Type: CAZyme
Location: 2 - 1642 (+)
Gene ID: HRGMv2_2417_68_2
Type:
Location: 1642 - 1800 (+)
Gene ID: HRGMv2_2417_68_3
Type:
Location: 1807 - 2493 (+)
Gene ID: HRGMv2_2417_68_4
Type: TC
Location: 2584 - 3090 (+)
Gene ID: HRGMv2_2417_68_5
Type: TC
Location: 3087 - 3365 (+)
Gene ID: HRGMv2_2417_68_6
Type: TC
Location: 3367 - 4254 (+)
Gene ID: HRGMv2_2417_68_7
Type: CAZyme
Location: 4325 - 5842 (+)
Gene ID: HRGMv2_2417_68_8
Type: TF
Location: 5900 - 6829 (-)
Gene ID: HRGMv2_2417_68_9
Type: CAZyme
Location: 7056 - 8570 (+)
Gene ID: HRGMv2_2417_68_10
Type: CAZyme
Location: 8643 - 10145 (+)
Gene ID: HRGMv2_2417_68_11
Type: CAZyme
Location: 10170 - 11711 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2417_68_9 vegan > omnivore 2.02085 0.01882

🧭 Explore Read Mapping of CGC

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