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Cluster: HRGMv2_2417_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2417_2 HRGMv2_2417_2_4 2925 3725 - 9.B.18.1.3
pfam HRGMv2_2417_2 HRGMv2_2417_2_5 3757 5289 - Wzy_C
STP HRGMv2_2417_2 HRGMv2_2417_2_6 5321 6430 - Aminotran_1_2
CAZyme HRGMv2_2417_2 HRGMv2_2417_2_7 6659 7564 - GT2
CAZyme HRGMv2_2417_2 HRGMv2_2417_2_8 7579 8511 - GT2
NULL(UNKNOWN) HRGMv2_2417_2 HRGMv2_2417_2_9 8531 9868 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2417_2 HRGMv2_2417_2_10 9865 11052 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2417_2 HRGMv2_2417_2_11 11055 12140 - GT4
pfam HRGMv2_2417_2 HRGMv2_2417_2_12 12137 12652 - Glyco_tran_28_C
pfam HRGMv2_2417_2 HRGMv2_2417_2_13 12652 13101 - Alg14
TC HRGMv2_2417_2 HRGMv2_2417_2_14 13130 14539 - 9.B.18.1.2
TC HRGMv2_2417_2 HRGMv2_2417_2_15 14556 16028 - 2.A.66.2.22
CAZyme HRGMv2_2417_2 HRGMv2_2417_2_16 16032 17039 - GT2
CAZyme HRGMv2_2417_2 HRGMv2_2417_2_17 17043 18056 - GT2
CAZyme HRGMv2_2417_2 HRGMv2_2417_2_18 18067 19173 - GT4
pfam HRGMv2_2417_2 HRGMv2_2417_2_19 19195 20604 - Wzy_C
pfam HRGMv2_2417_2 HRGMv2_2417_2_20 20618 21715 - Amino_oxidase | GLF | NAD_binding_8
CAZyme HRGMv2_2417_2 HRGMv2_2417_2_21 21789 22859 - GT2
CAZyme HRGMv2_2417_2 HRGMv2_2417_2_22 22861 24078 - GT4
TC HRGMv2_2417_2 HRGMv2_2417_2_23 24148 24846 - 9.B.18.1.3
Gene ID: HRGMv2_2417_2_4
Type: TC
Location: 2925 - 3725 (-)
Gene ID: HRGMv2_2417_2_5
Type: pfam
Location: 3757 - 5289 (-)
Gene ID: HRGMv2_2417_2_6
Type: STP
Location: 5321 - 6430 (-)
Gene ID: HRGMv2_2417_2_7
Type: CAZyme
Location: 6659 - 7564 (-)
Gene ID: HRGMv2_2417_2_8
Type: CAZyme
Location: 7579 - 8511 (-)
Gene ID: HRGMv2_2417_2_9
Type:
Location: 8531 - 9868 (-)
Gene ID: HRGMv2_2417_2_10
Type:
Location: 9865 - 11052 (-)
Gene ID: HRGMv2_2417_2_11
Type: CAZyme
Location: 11055 - 12140 (-)
Gene ID: HRGMv2_2417_2_12
Type: pfam
Location: 12137 - 12652 (-)
Gene ID: HRGMv2_2417_2_13
Type: pfam
Location: 12652 - 13101 (-)
Gene ID: HRGMv2_2417_2_14
Type: TC
Location: 13130 - 14539 (-)
Gene ID: HRGMv2_2417_2_15
Type: TC
Location: 14556 - 16028 (-)
Gene ID: HRGMv2_2417_2_16
Type: CAZyme
Location: 16032 - 17039 (-)
Gene ID: HRGMv2_2417_2_17
Type: CAZyme
Location: 17043 - 18056 (-)
Gene ID: HRGMv2_2417_2_18
Type: CAZyme
Location: 18067 - 19173 (-)
Gene ID: HRGMv2_2417_2_19
Type: pfam
Location: 19195 - 20604 (-)
Gene ID: HRGMv2_2417_2_20
Type: pfam
Location: 20618 - 21715 (-)
Gene ID: HRGMv2_2417_2_21
Type: CAZyme
Location: 21789 - 22859 (-)
Gene ID: HRGMv2_2417_2_22
Type: CAZyme
Location: 22861 - 24078 (-)
Gene ID: HRGMv2_2417_2_23
Type: TC
Location: 24148 - 24846 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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