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Cluster: HRGMv2_2415_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2415_66 HRGMv2_2415_66_1 2 2374 - GH2
TF HRGMv2_2415_66 HRGMv2_2415_66_2 2577 3440 + HTH_AraC | HTH_AraC
pfam HRGMv2_2415_66 HRGMv2_2415_66_3 3826 4872 + DnaJ
TC HRGMv2_2415_66 HRGMv2_2415_66_4 4851 6632 - 3.A.1.106.11
TC HRGMv2_2415_66 HRGMv2_2415_66_5 6629 8410 - 3.A.1.106.12
pfam HRGMv2_2415_66 HRGMv2_2415_66_6 8403 8819 - DUF454
TC HRGMv2_2415_66 HRGMv2_2415_66_7 8854 9642 - 3.A.1.14.10
TC HRGMv2_2415_66 HRGMv2_2415_66_8 9632 10681 - 3.A.1.14.10
TC HRGMv2_2415_66 HRGMv2_2415_66_9 10695 11858 - 3.A.1.14.10
TC HRGMv2_2415_66 HRGMv2_2415_66_10 11845 12774 - 3.A.1.14.10
TC HRGMv2_2415_66 HRGMv2_2415_66_11 12774 15497 - 8.A.43.1.1
Gene ID: HRGMv2_2415_66_1
Type: CAZyme
Location: 2 - 2374 (-)
Gene ID: HRGMv2_2415_66_2
Type: TF
Location: 2577 - 3440 (+)
Gene ID: HRGMv2_2415_66_3
Type: pfam
Location: 3826 - 4872 (+)
Gene ID: HRGMv2_2415_66_4
Type: TC
Location: 4851 - 6632 (-)
Gene ID: HRGMv2_2415_66_5
Type: TC
Location: 6629 - 8410 (-)
Gene ID: HRGMv2_2415_66_6
Type: pfam
Location: 8403 - 8819 (-)
Gene ID: HRGMv2_2415_66_7
Type: TC
Location: 8854 - 9642 (-)
Gene ID: HRGMv2_2415_66_8
Type: TC
Location: 9632 - 10681 (-)
Gene ID: HRGMv2_2415_66_9
Type: TC
Location: 10695 - 11858 (-)
Gene ID: HRGMv2_2415_66_10
Type: TC
Location: 11845 - 12774 (-)
Gene ID: HRGMv2_2415_66_11
Type: TC
Location: 12774 - 15497 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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