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Cluster: HRGMv2_2415_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2415_52 HRGMv2_2415_52_4 3542 4807 + 2.A.40.1.1
pfam HRGMv2_2415_52 HRGMv2_2415_52_5 5177 6673 + AraA_N | Arabinose_Iso_C | AraA_central
pfam HRGMv2_2415_52 HRGMv2_2415_52_6 6695 7390 + Aldolase_II
TC HRGMv2_2415_52 HRGMv2_2415_52_7 7722 9098 + 3.A.1.1.34
TC HRGMv2_2415_52 HRGMv2_2415_52_8 9199 10104 + 3.A.1.1.34
TC HRGMv2_2415_52 HRGMv2_2415_52_9 10108 10944 + 3.A.1.1.34
CAZyme HRGMv2_2415_52 HRGMv2_2415_52_10 10948 11919 + GH43_26
CAZyme HRGMv2_2415_52 HRGMv2_2415_52_11 11938 13437 + GH51_1
TC HRGMv2_2415_52 HRGMv2_2415_52_12 13460 14152 + 9.B.28.1.8
CAZyme HRGMv2_2415_52 HRGMv2_2415_52_13 14131 15645 + GH51_1
Gene ID: HRGMv2_2415_52_4
Type: TC
Location: 3542 - 4807 (+)
Gene ID: HRGMv2_2415_52_5
Type: pfam
Location: 5177 - 6673 (+)
Gene ID: HRGMv2_2415_52_6
Type: pfam
Location: 6695 - 7390 (+)
Gene ID: HRGMv2_2415_52_7
Type: TC
Location: 7722 - 9098 (+)
Gene ID: HRGMv2_2415_52_8
Type: TC
Location: 9199 - 10104 (+)
Gene ID: HRGMv2_2415_52_9
Type: TC
Location: 10108 - 10944 (+)
Gene ID: HRGMv2_2415_52_10
Type: CAZyme
Location: 10948 - 11919 (+)
Gene ID: HRGMv2_2415_52_11
Type: CAZyme
Location: 11938 - 13437 (+)
Gene ID: HRGMv2_2415_52_12
Type: TC
Location: 13460 - 14152 (+)
Gene ID: HRGMv2_2415_52_13
Type: CAZyme
Location: 14131 - 15645 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2415_52_5 vegetarian > omnivore 2.13053 0.00363
HRGMv2_2415_52_5 vegetarian > vegan 1.41575 0.02695

🧭 Explore Read Mapping of CGC

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