Cluster: HRGMv2_2415_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2415
- CGC Family ID: CGCFAM_00161
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2415_50 | HRGMv2_2415_50_20 | 22996 | 23691 | + | GT26 |
| NULL(UNKNOWN) | HRGMv2_2415_50 | HRGMv2_2415_50_21 | 23773 | 23880 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2415_50 | HRGMv2_2415_50_22 | 23902 | 24990 | + | HTH_30 | GGDEF_2 |
| TC | HRGMv2_2415_50 | HRGMv2_2415_50_23 | 25007 | 25693 | + | 3.A.1.140.1 |
| pfam | HRGMv2_2415_50 | HRGMv2_2415_50_24 | 25683 | 26591 | + | FtsX | FtsX_ECD |
| STP | HRGMv2_2415_50 | HRGMv2_2415_50_25 | 26688 | 27806 | + | Peptidase_M23 |
| TC | HRGMv2_2415_50 | HRGMv2_2415_50_26 | 27832 | 28974 | + | 9.B.174.1.1 |
Gene ID: HRGMv2_2415_50_20
Type: CAZyme
Location: 22996 - 23691 (+)
Type: CAZyme
Location: 22996 - 23691 (+)
Gene ID: HRGMv2_2415_50_21
Type:
Location: 23773 - 23880 (+)
Type:
Location: 23773 - 23880 (+)
Gene ID: HRGMv2_2415_50_22
Type: pfam
Location: 23902 - 24990 (+)
Type: pfam
Location: 23902 - 24990 (+)
Gene ID: HRGMv2_2415_50_23
Type: TC
Location: 25007 - 25693 (+)
Type: TC
Location: 25007 - 25693 (+)
Gene ID: HRGMv2_2415_50_24
Type: pfam
Location: 25683 - 26591 (+)
Type: pfam
Location: 25683 - 26591 (+)
Gene ID: HRGMv2_2415_50_25
Type: STP
Location: 26688 - 27806 (+)
Type: STP
Location: 26688 - 27806 (+)
Gene ID: HRGMv2_2415_50_26
Type: TC
Location: 27832 - 28974 (+)
Type: TC
Location: 27832 - 28974 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Species
Lachnoclostridium_B stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.