Cluster: HRGMv2_2415_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2415
- CGC Family ID: CGCFAM_08933
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2415_29 | HRGMv2_2415_29_39 | 36717 | 38276 | + | GT100 |
| pfam | HRGMv2_2415_29 | HRGMv2_2415_29_40 | 38267 | 39049 | + | CTP_transf_3 | NTP_transf_3 |
| TC | HRGMv2_2415_29 | HRGMv2_2415_29_41 | 39080 | 42739 | + | 3.A.1.122.2 |
| TF | HRGMv2_2415_29 | HRGMv2_2415_29_42 | 42851 | 43216 | - | Fe_dep_repress |
| STP | HRGMv2_2415_29 | HRGMv2_2415_29_43 | 43450 | 43662 | + | FeoA |
| TC | HRGMv2_2415_29 | HRGMv2_2415_29_44 | 43750 | 45750 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_2415_29_39
Type: CAZyme
Location: 36717 - 38276 (+)
Type: CAZyme
Location: 36717 - 38276 (+)
Gene ID: HRGMv2_2415_29_40
Type: pfam
Location: 38267 - 39049 (+)
Type: pfam
Location: 38267 - 39049 (+)
Gene ID: HRGMv2_2415_29_41
Type: TC
Location: 39080 - 42739 (+)
Type: TC
Location: 39080 - 42739 (+)
Gene ID: HRGMv2_2415_29_42
Type: TF
Location: 42851 - 43216 (-)
Type: TF
Location: 42851 - 43216 (-)
Gene ID: HRGMv2_2415_29_43
Type: STP
Location: 43450 - 43662 (+)
Type: STP
Location: 43450 - 43662 (+)
Gene ID: HRGMv2_2415_29_44
Type: TC
Location: 43750 - 45750 (+)
Type: TC
Location: 43750 - 45750 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Species
Lachnoclostridium_B stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.