Cluster: HRGMv2_2415_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2415
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2415_21 | HRGMv2_2415_21_5 | 5051 | 5887 | + | CE4 |
| pfam | HRGMv2_2415_21 | HRGMv2_2415_21_6 | 5998 | 7308 | - | ThiC_Rad_SAM |
| TC | HRGMv2_2415_21 | HRGMv2_2415_21_7 | 7552 | 8061 | - | 3.A.1.26.5 |
| TC | HRGMv2_2415_21 | HRGMv2_2415_21_8 | 8321 | 8998 | - | 1.A.62.2.1 |
| TC | HRGMv2_2415_21 | HRGMv2_2415_21_9 | 9160 | 10893 | - | 3.A.1.21.1 |
| TC | HRGMv2_2415_21 | HRGMv2_2415_21_10 | 10886 | 12670 | - | 3.A.1.21.1 |
| STP | HRGMv2_2415_21 | HRGMv2_2415_21_11 | 12784 | 13467 | - | TetR_N |
| TC | HRGMv2_2415_21 | HRGMv2_2415_21_12 | 13725 | 14303 | - | 4.F.1.1.7 |
| pfam | HRGMv2_2415_21 | HRGMv2_2415_21_13 | 14482 | 16728 | - | FtsX | FtsX |
| TC | HRGMv2_2415_21 | HRGMv2_2415_21_14 | 16741 | 17400 | - | 3.A.1.134.3 |
| STP | HRGMv2_2415_21 | HRGMv2_2415_21_15 | 17476 | 18150 | - | TetR_N |
| STP | HRGMv2_2415_21 | HRGMv2_2415_21_16 | 18877 | 19527 | + | TetR_N |
| TC | HRGMv2_2415_21 | HRGMv2_2415_21_17 | 19617 | 21377 | + | 3.A.1.21.1 |
| TC | HRGMv2_2415_21 | HRGMv2_2415_21_18 | 21374 | 23122 | + | 3.A.1.106.9 |
Gene ID: HRGMv2_2415_21_5
Type: CAZyme
Location: 5051 - 5887 (+)
Type: CAZyme
Location: 5051 - 5887 (+)
Gene ID: HRGMv2_2415_21_6
Type: pfam
Location: 5998 - 7308 (-)
Type: pfam
Location: 5998 - 7308 (-)
Gene ID: HRGMv2_2415_21_7
Type: TC
Location: 7552 - 8061 (-)
Type: TC
Location: 7552 - 8061 (-)
Gene ID: HRGMv2_2415_21_8
Type: TC
Location: 8321 - 8998 (-)
Type: TC
Location: 8321 - 8998 (-)
Gene ID: HRGMv2_2415_21_9
Type: TC
Location: 9160 - 10893 (-)
Type: TC
Location: 9160 - 10893 (-)
Gene ID: HRGMv2_2415_21_10
Type: TC
Location: 10886 - 12670 (-)
Type: TC
Location: 10886 - 12670 (-)
Gene ID: HRGMv2_2415_21_11
Type: STP
Location: 12784 - 13467 (-)
Type: STP
Location: 12784 - 13467 (-)
Gene ID: HRGMv2_2415_21_12
Type: TC
Location: 13725 - 14303 (-)
Type: TC
Location: 13725 - 14303 (-)
Gene ID: HRGMv2_2415_21_13
Type: pfam
Location: 14482 - 16728 (-)
Type: pfam
Location: 14482 - 16728 (-)
Gene ID: HRGMv2_2415_21_14
Type: TC
Location: 16741 - 17400 (-)
Type: TC
Location: 16741 - 17400 (-)
Gene ID: HRGMv2_2415_21_15
Type: STP
Location: 17476 - 18150 (-)
Type: STP
Location: 17476 - 18150 (-)
Gene ID: HRGMv2_2415_21_16
Type: STP
Location: 18877 - 19527 (+)
Type: STP
Location: 18877 - 19527 (+)
Gene ID: HRGMv2_2415_21_17
Type: TC
Location: 19617 - 21377 (+)
Type: TC
Location: 19617 - 21377 (+)
Gene ID: HRGMv2_2415_21_18
Type: TC
Location: 21374 - 23122 (+)
Type: TC
Location: 21374 - 23122 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Species
Lachnoclostridium_B stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.