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Cluster: HRGMv2_2412_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2412_2 HRGMv2_2412_2_102 114736 116874 - 1.B.52.2.2
TC HRGMv2_2412_2 HRGMv2_2412_2_103 116911 118122 - 3.A.1.2.5
TC HRGMv2_2412_2 HRGMv2_2412_2_104 118134 119660 - 3.A.1.2.5
TC HRGMv2_2412_2 HRGMv2_2412_2_105 119785 120981 - 3.A.1.2.22
TC HRGMv2_2412_2 HRGMv2_2412_2_106 121161 122213 - 3.A.1.2.26
TF HRGMv2_2412_2 HRGMv2_2412_2_107 122217 123815 - HTH_AraC | HTH_AraC
TC HRGMv2_2412_2 HRGMv2_2412_2_108 123819 125315 - 8.A.59.2.1
STP HRGMv2_2412_2 HRGMv2_2412_2_109 125290 126348 - Peripla_BP_3
pfam HRGMv2_2412_2 HRGMv2_2412_2_110 126419 127165 - adh_short | KR | adh_short_C2 | SDR
CAZyme HRGMv2_2412_2 HRGMv2_2412_2_111 127504 129633 - GH13_39
TC HRGMv2_2412_2 HRGMv2_2412_2_112 129978 131816 - 3.A.16.1.1
Gene ID: HRGMv2_2412_2_102
Type: TC
Location: 114736 - 116874 (-)
Gene ID: HRGMv2_2412_2_103
Type: TC
Location: 116911 - 118122 (-)
Gene ID: HRGMv2_2412_2_104
Type: TC
Location: 118134 - 119660 (-)
Gene ID: HRGMv2_2412_2_105
Type: TC
Location: 119785 - 120981 (-)
Gene ID: HRGMv2_2412_2_106
Type: TC
Location: 121161 - 122213 (-)
Gene ID: HRGMv2_2412_2_107
Type: TF
Location: 122217 - 123815 (-)
Gene ID: HRGMv2_2412_2_108
Type: TC
Location: 123819 - 125315 (-)
Gene ID: HRGMv2_2412_2_109
Type: STP
Location: 125290 - 126348 (-)
Gene ID: HRGMv2_2412_2_110
Type: pfam
Location: 126419 - 127165 (-)
Gene ID: HRGMv2_2412_2_111
Type: CAZyme
Location: 127504 - 129633 (-)
Gene ID: HRGMv2_2412_2_112
Type: TC
Location: 129978 - 131816 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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