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Cluster: HRGMv2_2412_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2412_28 HRGMv2_2412_28_4 1625 2656 + 3.A.1.104.1
TC HRGMv2_2412_28 HRGMv2_2412_28_5 2693 4063 + 3.A.1.103.6
pfam HRGMv2_2412_28 HRGMv2_2412_28_6 4078 6183 + PCMT | CMAS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme HRGMv2_2412_28 HRGMv2_2412_28_7 6199 8397 + GT2
CAZyme HRGMv2_2412_28 HRGMv2_2412_28_8 8431 10422 + GT2 | GT2
pfam HRGMv2_2412_28 HRGMv2_2412_28_9 10508 12229 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2412_28 HRGMv2_2412_28_10 12352 13737 + GT2
CAZyme HRGMv2_2412_28 HRGMv2_2412_28_11 13767 14735 + GT2
TC HRGMv2_2412_28 HRGMv2_2412_28_12 14802 16211 + 9.B.18.1.1
pfam HRGMv2_2412_28 HRGMv2_2412_28_13 16382 17527 + LytR_cpsA_psr
CAZyme HRGMv2_2412_28 HRGMv2_2412_28_14 17592 18518 + GT2
Gene ID: HRGMv2_2412_28_4
Type: TC
Location: 1625 - 2656 (+)
Gene ID: HRGMv2_2412_28_5
Type: TC
Location: 2693 - 4063 (+)
Gene ID: HRGMv2_2412_28_6
Type: pfam
Location: 4078 - 6183 (+)
Gene ID: HRGMv2_2412_28_7
Type: CAZyme
Location: 6199 - 8397 (+)
Gene ID: HRGMv2_2412_28_8
Type: CAZyme
Location: 8431 - 10422 (+)
Gene ID: HRGMv2_2412_28_9
Type: pfam
Location: 10508 - 12229 (+)
Gene ID: HRGMv2_2412_28_10
Type: CAZyme
Location: 12352 - 13737 (+)
Gene ID: HRGMv2_2412_28_11
Type: CAZyme
Location: 13767 - 14735 (+)
Gene ID: HRGMv2_2412_28_12
Type: TC
Location: 14802 - 16211 (+)
Gene ID: HRGMv2_2412_28_13
Type: pfam
Location: 16382 - 17527 (+)
Gene ID: HRGMv2_2412_28_14
Type: CAZyme
Location: 17592 - 18518 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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