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Cluster: HRGMv2_2412_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2412_1 HRGMv2_2412_1_242 240783 242138 - 3.A.5.1.1
STP HRGMv2_2412_1 HRGMv2_2412_1_243 242142 242483 - Sigma70_r4
TF HRGMv2_2412_1 HRGMv2_2412_1_244 242579 243463 - HTH_AraC
CAZyme HRGMv2_2412_1 HRGMv2_2412_1_245 243471 244565 - GH25
TC HRGMv2_2412_1 HRGMv2_2412_1_246 244675 245526 - 2.A.115.1.5
STP HRGMv2_2412_1 HRGMv2_2412_1_247 245604 246827 - PALP
TC HRGMv2_2412_1 HRGMv2_2412_1_248 246867 247805 - 3.A.5.1.1
pfam HRGMv2_2412_1 HRGMv2_2412_1_249 247805 251365 - SMC_N | SMC_hinge | AAA_15 | AAA_23
pfam HRGMv2_2412_1 HRGMv2_2412_1_250 251373 252077 - dsrm | Ribonuclease_3 | Ribonucleas_3_3
TC HRGMv2_2412_1 HRGMv2_2412_1_251 252155 252385 - 3.D.1.6.3
Gene ID: HRGMv2_2412_1_242
Type: TC
Location: 240783 - 242138 (-)
Gene ID: HRGMv2_2412_1_243
Type: STP
Location: 242142 - 242483 (-)
Gene ID: HRGMv2_2412_1_244
Type: TF
Location: 242579 - 243463 (-)
Gene ID: HRGMv2_2412_1_245
Type: CAZyme
Location: 243471 - 244565 (-)
Gene ID: HRGMv2_2412_1_246
Type: TC
Location: 244675 - 245526 (-)
Gene ID: HRGMv2_2412_1_247
Type: STP
Location: 245604 - 246827 (-)
Gene ID: HRGMv2_2412_1_248
Type: TC
Location: 246867 - 247805 (-)
Gene ID: HRGMv2_2412_1_249
Type: pfam
Location: 247805 - 251365 (-)
Gene ID: HRGMv2_2412_1_250
Type: pfam
Location: 251373 - 252077 (-)
Gene ID: HRGMv2_2412_1_251
Type: TC
Location: 252155 - 252385 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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