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Cluster: HRGMv2_2412_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2412_10 HRGMv2_2412_10_22 22612 23469 - 3.A.1.1.34
TC HRGMv2_2412_10 HRGMv2_2412_10_23 23485 24372 - 3.A.1.1.23
STP HRGMv2_2412_10 HRGMv2_2412_10_24 24442 25851 - SBP_bac_1
TC HRGMv2_2412_10 HRGMv2_2412_10_25 25961 27700 - 8.A.59.2.1
pfam HRGMv2_2412_10 HRGMv2_2412_10_26 27805 29217 - PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2412_10 HRGMv2_2412_10_27 29259 31652 - GH94
pfam HRGMv2_2412_10 HRGMv2_2412_10_28 31837 33213 + Palm_thioest
TC HRGMv2_2412_10 HRGMv2_2412_10_29 33224 34630 - 2.A.25.1.4
Gene ID: HRGMv2_2412_10_22
Type: TC
Location: 22612 - 23469 (-)
Gene ID: HRGMv2_2412_10_23
Type: TC
Location: 23485 - 24372 (-)
Gene ID: HRGMv2_2412_10_24
Type: STP
Location: 24442 - 25851 (-)
Gene ID: HRGMv2_2412_10_25
Type: TC
Location: 25961 - 27700 (-)
Gene ID: HRGMv2_2412_10_26
Type: pfam
Location: 27805 - 29217 (-)
Gene ID: HRGMv2_2412_10_27
Type: CAZyme
Location: 29259 - 31652 (-)
Gene ID: HRGMv2_2412_10_28
Type: pfam
Location: 31837 - 33213 (+)
Gene ID: HRGMv2_2412_10_29
Type: TC
Location: 33224 - 34630 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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