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Cluster: HRGMv2_2407_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2407_15 HRGMv2_2407_15_40 36481 38481 - GH13_8
NULL(UNKNOWN) HRGMv2_2407_15 HRGMv2_2407_15_41 38656 42813 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2407_15 HRGMv2_2407_15_42 42882 43679 - 3.A.1.34.1
TC HRGMv2_2407_15 HRGMv2_2407_15_43 43673 44554 - 3.A.1.34.1
pfam HRGMv2_2407_15 HRGMv2_2407_15_44 44569 45534 - ABC_sub_bind | Peripla_BP_4
pfam HRGMv2_2407_15 HRGMv2_2407_15_45 45971 47719 + ILVD_EDD_N | ILV_EDD_C
TC HRGMv2_2407_15 HRGMv2_2407_15_46 47774 50449 - 9.B.74.1.4
pfam HRGMv2_2407_15 HRGMv2_2407_15_47 50446 52521 - ACR_tran | MMPL | MMPL
STP HRGMv2_2407_15 HRGMv2_2407_15_48 52721 53338 + TetR_N
TC HRGMv2_2407_15 HRGMv2_2407_15_49 53359 55260 - 3.A.1.135.5
TC HRGMv2_2407_15 HRGMv2_2407_15_50 55260 57005 - 3.A.1.135.5
Gene ID: HRGMv2_2407_15_40
Type: CAZyme
Location: 36481 - 38481 (-)
Gene ID: HRGMv2_2407_15_41
Type:
Location: 38656 - 42813 (+)
Gene ID: HRGMv2_2407_15_42
Type: TC
Location: 42882 - 43679 (-)
Gene ID: HRGMv2_2407_15_43
Type: TC
Location: 43673 - 44554 (-)
Gene ID: HRGMv2_2407_15_44
Type: pfam
Location: 44569 - 45534 (-)
Gene ID: HRGMv2_2407_15_45
Type: pfam
Location: 45971 - 47719 (+)
Gene ID: HRGMv2_2407_15_46
Type: TC
Location: 47774 - 50449 (-)
Gene ID: HRGMv2_2407_15_47
Type: pfam
Location: 50446 - 52521 (-)
Gene ID: HRGMv2_2407_15_48
Type: STP
Location: 52721 - 53338 (+)
Gene ID: HRGMv2_2407_15_49
Type: TC
Location: 53359 - 55260 (-)
Gene ID: HRGMv2_2407_15_50
Type: TC
Location: 55260 - 57005 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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