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Cluster: HRGMv2_2407_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2407_1 HRGMv2_2407_1_137 150252 151127 - 3.A.1.1.9
TC HRGMv2_2407_1 HRGMv2_2407_1_138 151141 152094 - 3.A.1.1.10
TF HRGMv2_2407_1 HRGMv2_2407_1_139 152180 153040 + HTH_AraC
CAZyme HRGMv2_2407_1 HRGMv2_2407_1_140 153261 155966 - GH138
CAZyme HRGMv2_2407_1 HRGMv2_2407_1_141 155963 157981 - GH42
CAZyme HRGMv2_2407_1 HRGMv2_2407_1_142 157991 159334 - GH29
NULL(UNKNOWN) HRGMv2_2407_1 HRGMv2_2407_1_143 159884 160381 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2407_1 HRGMv2_2407_1_144 160736 161620 - 3.A.1.1.10
TC HRGMv2_2407_1 HRGMv2_2407_1_145 161639 162574 - 3.A.1.1.10
Gene ID: HRGMv2_2407_1_137
Type: TC
Location: 150252 - 151127 (-)
Gene ID: HRGMv2_2407_1_138
Type: TC
Location: 151141 - 152094 (-)
Gene ID: HRGMv2_2407_1_139
Type: TF
Location: 152180 - 153040 (+)
Gene ID: HRGMv2_2407_1_140
Type: CAZyme
Location: 153261 - 155966 (-)
Gene ID: HRGMv2_2407_1_141
Type: CAZyme
Location: 155963 - 157981 (-)
Gene ID: HRGMv2_2407_1_142
Type: CAZyme
Location: 157991 - 159334 (-)
Gene ID: HRGMv2_2407_1_143
Type:
Location: 159884 - 160381 (+)
Gene ID: HRGMv2_2407_1_144
Type: TC
Location: 160736 - 161620 (-)
Gene ID: HRGMv2_2407_1_145
Type: TC
Location: 161639 - 162574 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2407_1_137 vegetarian > vegan 3.05619 0.03131

🧭 Explore Read Mapping of CGC

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