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Cluster: HRGMv2_2400_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2400_17 HRGMv2_2400_17_14 11506 13545 - 9.A.8.1.6
STP HRGMv2_2400_17 HRGMv2_2400_17_15 13535 13771 - FeoA
pfam HRGMv2_2400_17 HRGMv2_2400_17_16 13942 14709 - Pan_kinase
TC HRGMv2_2400_17 HRGMv2_2400_17_17 14711 15376 - 2.A.87.2.3
pfam HRGMv2_2400_17 HRGMv2_2400_17_18 15441 16631 - Flavoprotein | DFP
TC HRGMv2_2400_17 HRGMv2_2400_17_19 16683 18845 - 9.B.142.1.2
CAZyme HRGMv2_2400_17 HRGMv2_2400_17_20 18845 19549 - GT2
TC HRGMv2_2400_17 HRGMv2_2400_17_21 19615 20238 - 2.A.115.2.14
TC HRGMv2_2400_17 HRGMv2_2400_17_22 20256 20966 - 3.A.1.4.10
TC HRGMv2_2400_17 HRGMv2_2400_17_23 20979 21737 - 3.A.1.4.10
TC HRGMv2_2400_17 HRGMv2_2400_17_24 21739 22821 - 3.A.1.4.8
TC HRGMv2_2400_17 HRGMv2_2400_17_25 22822 23706 - 3.A.1.4.10
TF HRGMv2_2400_17 HRGMv2_2400_17_26 23857 24375 - HTH_11
pfam HRGMv2_2400_17 HRGMv2_2400_17_27 24381 25235 - QRPTase_C | QRPTase_N
TC HRGMv2_2400_17 HRGMv2_2400_17_28 25198 26523 - 3.D.10.1.4
pfam HRGMv2_2400_17 HRGMv2_2400_17_29 26537 27448 - NadA
TC HRGMv2_2400_17 HRGMv2_2400_17_30 27666 28865 - 3.A.1.4.10
TC HRGMv2_2400_17 HRGMv2_2400_17_31 29020 30369 + 2.A.66.1.25
pfam HRGMv2_2400_17 HRGMv2_2400_17_32 30366 31004 + ACPS | AASDHPPT_N
STP HRGMv2_2400_17 HRGMv2_2400_17_33 31200 31541 - AraC_binding
TC HRGMv2_2400_17 HRGMv2_2400_17_34 31604 32932 - 2.A.66.1.22
TC HRGMv2_2400_17 HRGMv2_2400_17_35 32937 34265 - 2.A.66.1.28
Gene ID: HRGMv2_2400_17_14
Type: TC
Location: 11506 - 13545 (-)
Gene ID: HRGMv2_2400_17_15
Type: STP
Location: 13535 - 13771 (-)
Gene ID: HRGMv2_2400_17_16
Type: pfam
Location: 13942 - 14709 (-)
Gene ID: HRGMv2_2400_17_17
Type: TC
Location: 14711 - 15376 (-)
Gene ID: HRGMv2_2400_17_18
Type: pfam
Location: 15441 - 16631 (-)
Gene ID: HRGMv2_2400_17_19
Type: TC
Location: 16683 - 18845 (-)
Gene ID: HRGMv2_2400_17_20
Type: CAZyme
Location: 18845 - 19549 (-)
Gene ID: HRGMv2_2400_17_21
Type: TC
Location: 19615 - 20238 (-)
Gene ID: HRGMv2_2400_17_22
Type: TC
Location: 20256 - 20966 (-)
Gene ID: HRGMv2_2400_17_23
Type: TC
Location: 20979 - 21737 (-)
Gene ID: HRGMv2_2400_17_24
Type: TC
Location: 21739 - 22821 (-)
Gene ID: HRGMv2_2400_17_25
Type: TC
Location: 22822 - 23706 (-)
Gene ID: HRGMv2_2400_17_26
Type: TF
Location: 23857 - 24375 (-)
Gene ID: HRGMv2_2400_17_27
Type: pfam
Location: 24381 - 25235 (-)
Gene ID: HRGMv2_2400_17_28
Type: TC
Location: 25198 - 26523 (-)
Gene ID: HRGMv2_2400_17_29
Type: pfam
Location: 26537 - 27448 (-)
Gene ID: HRGMv2_2400_17_30
Type: TC
Location: 27666 - 28865 (-)
Gene ID: HRGMv2_2400_17_31
Type: TC
Location: 29020 - 30369 (+)
Gene ID: HRGMv2_2400_17_32
Type: pfam
Location: 30366 - 31004 (+)
Gene ID: HRGMv2_2400_17_33
Type: STP
Location: 31200 - 31541 (-)
Gene ID: HRGMv2_2400_17_34
Type: TC
Location: 31604 - 32932 (-)
Gene ID: HRGMv2_2400_17_35
Type: TC
Location: 32937 - 34265 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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