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Cluster: HRGMv2_2400_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2400_14 HRGMv2_2400_14_13 5622 6653 + 2.A.66.1.32
pfam HRGMv2_2400_14 HRGMv2_2400_14_14 6721 7026 + DUF2089
NULL(UNKNOWN) HRGMv2_2400_14 HRGMv2_2400_14_15 7023 7358 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2400_14 HRGMv2_2400_14_16 7504 7971 + 1.A.22.1.4
NULL(UNKNOWN) HRGMv2_2400_14 HRGMv2_2400_14_17 7989 8732 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2400_14 HRGMv2_2400_14_18 8774 9493 - 9.B.120.1.3
TF HRGMv2_2400_14 HRGMv2_2400_14_19 9703 10413 + Trans_reg_C
TC HRGMv2_2400_14 HRGMv2_2400_14_20 10421 11332 + 2.A.21.9.2
TF HRGMv2_2400_14 HRGMv2_2400_14_21 11333 12262 - HTH_1
pfam HRGMv2_2400_14 HRGMv2_2400_14_22 12635 13696 + URO-D
TC HRGMv2_2400_14 HRGMv2_2400_14_23 13743 15350 - 8.A.7.1.1
STP HRGMv2_2400_14 HRGMv2_2400_14_24 15387 15644 - PTS-HPr
CAZyme HRGMv2_2400_14 HRGMv2_2400_14_25 15870 17330 - GH32
TC HRGMv2_2400_14 HRGMv2_2400_14_26 17359 19224 - 4.A.1.2.9
TF HRGMv2_2400_14 HRGMv2_2400_14_27 19593 20591 + LacI
NULL(UNKNOWN) HRGMv2_2400_14 HRGMv2_2400_14_28 20588 20722 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2400_14 HRGMv2_2400_14_29 20746 21432 + 3.A.1.125.3
pfam HRGMv2_2400_14 HRGMv2_2400_14_30 21419 24010 + FtsX | FtsX
pfam HRGMv2_2400_14 HRGMv2_2400_14_31 24251 25426 + NMT1 | NMT1_2
TC HRGMv2_2400_14 HRGMv2_2400_14_32 25555 26337 + 3.A.1.17.1
TC HRGMv2_2400_14 HRGMv2_2400_14_33 26337 27128 + 3.A.1.17.1
TC HRGMv2_2400_14 HRGMv2_2400_14_34 27101 27883 + 3.A.1.16.2
TC HRGMv2_2400_14 HRGMv2_2400_14_35 27899 28660 + 3.A.1.17.5
Gene ID: HRGMv2_2400_14_13
Type: TC
Location: 5622 - 6653 (+)
Gene ID: HRGMv2_2400_14_14
Type: pfam
Location: 6721 - 7026 (+)
Gene ID: HRGMv2_2400_14_15
Type:
Location: 7023 - 7358 (+)
Gene ID: HRGMv2_2400_14_16
Type: TC
Location: 7504 - 7971 (+)
Gene ID: HRGMv2_2400_14_17
Type:
Location: 7989 - 8732 (+)
Gene ID: HRGMv2_2400_14_18
Type: TC
Location: 8774 - 9493 (-)
Gene ID: HRGMv2_2400_14_19
Type: TF
Location: 9703 - 10413 (+)
Gene ID: HRGMv2_2400_14_20
Type: TC
Location: 10421 - 11332 (+)
Gene ID: HRGMv2_2400_14_21
Type: TF
Location: 11333 - 12262 (-)
Gene ID: HRGMv2_2400_14_22
Type: pfam
Location: 12635 - 13696 (+)
Gene ID: HRGMv2_2400_14_23
Type: TC
Location: 13743 - 15350 (-)
Gene ID: HRGMv2_2400_14_24
Type: STP
Location: 15387 - 15644 (-)
Gene ID: HRGMv2_2400_14_25
Type: CAZyme
Location: 15870 - 17330 (-)
Gene ID: HRGMv2_2400_14_26
Type: TC
Location: 17359 - 19224 (-)
Gene ID: HRGMv2_2400_14_27
Type: TF
Location: 19593 - 20591 (+)
Gene ID: HRGMv2_2400_14_28
Type:
Location: 20588 - 20722 (+)
Gene ID: HRGMv2_2400_14_29
Type: TC
Location: 20746 - 21432 (+)
Gene ID: HRGMv2_2400_14_30
Type: pfam
Location: 21419 - 24010 (+)
Gene ID: HRGMv2_2400_14_31
Type: pfam
Location: 24251 - 25426 (+)
Gene ID: HRGMv2_2400_14_32
Type: TC
Location: 25555 - 26337 (+)
Gene ID: HRGMv2_2400_14_33
Type: TC
Location: 26337 - 27128 (+)
Gene ID: HRGMv2_2400_14_34
Type: TC
Location: 27101 - 27883 (+)
Gene ID: HRGMv2_2400_14_35
Type: TC
Location: 27899 - 28660 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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