Cluster: HRGMv2_2400_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2400
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2400_9 | HRGMv2_2400_9_43 | 49598 | 51409 | - | 8.A.59.2.1 |
| TC | HRGMv2_2400_9 | HRGMv2_2400_9_44 | 51757 | 52761 | + | 3.A.1.2.4 |
| TC | HRGMv2_2400_9 | HRGMv2_2400_9_45 | 52821 | 54317 | + | 3.A.1.2.20 |
| TC | HRGMv2_2400_9 | HRGMv2_2400_9_46 | 54318 | 55325 | + | 3.A.1.2.13 |
| pfam | HRGMv2_2400_9 | HRGMv2_2400_9_47 | 55343 | 56599 | + | URO-D |
| pfam | HRGMv2_2400_9 | HRGMv2_2400_9_48 | 56572 | 59163 | - | YfhO |
| CAZyme | HRGMv2_2400_9 | HRGMv2_2400_9_49 | 59150 | 60127 | - | GT2 |
Gene ID: HRGMv2_2400_9_43
Type: TC
Location: 49598 - 51409 (-)
Type: TC
Location: 49598 - 51409 (-)
Gene ID: HRGMv2_2400_9_44
Type: TC
Location: 51757 - 52761 (+)
Type: TC
Location: 51757 - 52761 (+)
Gene ID: HRGMv2_2400_9_45
Type: TC
Location: 52821 - 54317 (+)
Type: TC
Location: 52821 - 54317 (+)
Gene ID: HRGMv2_2400_9_46
Type: TC
Location: 54318 - 55325 (+)
Type: TC
Location: 54318 - 55325 (+)
Gene ID: HRGMv2_2400_9_47
Type: pfam
Location: 55343 - 56599 (+)
Type: pfam
Location: 55343 - 56599 (+)
Gene ID: HRGMv2_2400_9_48
Type: pfam
Location: 56572 - 59163 (-)
Type: pfam
Location: 56572 - 59163 (-)
Gene ID: HRGMv2_2400_9_49
Type: CAZyme
Location: 59150 - 60127 (-)
Type: CAZyme
Location: 59150 - 60127 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.