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Cluster: HRGMv2_2400_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2400_9 HRGMv2_2400_9_28 30666 32153 + 3.A.1.2.13
TC HRGMv2_2400_9 HRGMv2_2400_9_29 32150 33091 + 3.A.1.2.1
TC HRGMv2_2400_9 HRGMv2_2400_9_30 33112 34035 + 3.A.1.2.13
pfam HRGMv2_2400_9 HRGMv2_2400_9_31 34112 35173 - Peripla_BP_4
TC HRGMv2_2400_9 HRGMv2_2400_9_32 35400 36794 - 2.A.66.1.32
CAZyme HRGMv2_2400_9 HRGMv2_2400_9_33 37039 39072 + GH120
TF HRGMv2_2400_9 HRGMv2_2400_9_34 39047 39898 - HTH_AraC | HTH_AraC
TC HRGMv2_2400_9 HRGMv2_2400_9_35 40084 41085 + 3.A.1.2.20
TC HRGMv2_2400_9 HRGMv2_2400_9_36 41105 42622 + 3.A.1.2.19
Gene ID: HRGMv2_2400_9_28
Type: TC
Location: 30666 - 32153 (+)
Gene ID: HRGMv2_2400_9_29
Type: TC
Location: 32150 - 33091 (+)
Gene ID: HRGMv2_2400_9_30
Type: TC
Location: 33112 - 34035 (+)
Gene ID: HRGMv2_2400_9_31
Type: pfam
Location: 34112 - 35173 (-)
Gene ID: HRGMv2_2400_9_32
Type: TC
Location: 35400 - 36794 (-)
Gene ID: HRGMv2_2400_9_33
Type: CAZyme
Location: 37039 - 39072 (+)
Gene ID: HRGMv2_2400_9_34
Type: TF
Location: 39047 - 39898 (-)
Gene ID: HRGMv2_2400_9_35
Type: TC
Location: 40084 - 41085 (+)
Gene ID: HRGMv2_2400_9_36
Type: TC
Location: 41105 - 42622 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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