Cluster: HRGMv2_2400_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2400
- CGC Family ID: CGCFAM_07083
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2400_9 | HRGMv2_2400_9_20 | 22482 | 23978 | + | 3.A.1.2.20 |
| TC | HRGMv2_2400_9 | HRGMv2_2400_9_21 | 23988 | 24950 | + | 3.A.1.2.19 |
| CAZyme | HRGMv2_2400_9 | HRGMv2_2400_9_22 | 24992 | 25819 | + | CE1 |
Gene ID: HRGMv2_2400_9_20
Type: TC
Location: 22482 - 23978 (+)
Type: TC
Location: 22482 - 23978 (+)
Gene ID: HRGMv2_2400_9_21
Type: TC
Location: 23988 - 24950 (+)
Type: TC
Location: 23988 - 24950 (+)
Gene ID: HRGMv2_2400_9_22
Type: CAZyme
Location: 24992 - 25819 (+)
Type: CAZyme
Location: 24992 - 25819 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.