Cluster: HRGMv2_2400_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2400
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2400_6 | HRGMv2_2400_6_20 | 23324 | 24886 | + | CBM50 |
| pfam | HRGMv2_2400_6 | HRGMv2_2400_6_21 | 24969 | 25841 | + | GHMP_kinases_N | GHMP_kinases_C |
| TF | HRGMv2_2400_6 | HRGMv2_2400_6_22 | 25838 | 26512 | + | GntR |
| TC | HRGMv2_2400_6 | HRGMv2_2400_6_23 | 26585 | 28093 | + | 9.A.11.1.2 |
Gene ID: HRGMv2_2400_6_20
Type: CAZyme
Location: 23324 - 24886 (+)
Type: CAZyme
Location: 23324 - 24886 (+)
Gene ID: HRGMv2_2400_6_21
Type: pfam
Location: 24969 - 25841 (+)
Type: pfam
Location: 24969 - 25841 (+)
Gene ID: HRGMv2_2400_6_22
Type: TF
Location: 25838 - 26512 (+)
Type: TF
Location: 25838 - 26512 (+)
Gene ID: HRGMv2_2400_6_23
Type: TC
Location: 26585 - 28093 (+)
Type: TC
Location: 26585 - 28093 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.